Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01320 641 / 0 ATSTE24 Peptidase family M48 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018820 [exp] 749 / 0 AT4G01320 719 / 0.0 Peptidase family M48 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G162700 [exp] 662 / 0 AT4G01320 744 / 0.0 Peptidase family M48 family protein (.1) Potri.014G088900 [exp] 662 / 0 AT4G01320 757 / 0.0 Peptidase family M48 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01435 [flax] [poplar] Peptidase_M48 Peptidase family M48
Representative CDS sequence Show only first row Show all	>Lus10005123 pacid=23153399 polypeptide=Lus10005123 locus=Lus10005123.g ID=Lus10005123.BGIv1.0 annot-version=v1.0 ATGGCGATCCCTTTCTTGGAACTCGTTGTAGGTTTTATGATAATGATGTACATCTTTGAAACGTATCTTGATCTTCGTCAACTTGCTGCGTACAAGCTCC TTACCTTACCAAGACCTTTAAAAGGAGTCATTAGCCAGGAGAAGTTTGAGAAATCTCGAGCATATAGCCTTGATAAAAGCTACTATAATTTTGTTCACGA CTTTGTGAGTATTGTGTTGGACTCGGCCATTTTATGGTATGGTGTATTGCCTTGGGTTTGGAAGAAATCGGAGAGCTTTCTGGCCTCTGTTGGACTTAAT GCAGAGAATGAGATAATCCTTACTCTTGCCTTTTTGGGCAGTATGATGATGTGGTCACAGATCACCGATTTGCCATTTTCCCTATATTCAACATTTGTGA TCGAAGCACGTCATGGTTTTAACAAACAAACAATATGGATGTTCATTAAGGACTTGTTCAAGGGAATCCTGCTCGCTGTCATACTTGGCCCACCTATTGT TGCTGCAATAATCTTTATTGTGCAGAAAGGAGGTCCATACTTGGCCATATATCTTTGGGCCTTCATGTTTGTACTCTCTCTTGTGATGATGACAATCTAT CCAGTGTTAATCGCTCCACTGTTCAACACGTTCACCCCTCTTCCAGAAGGAAACCTCAGGGAGAAAATCGAGAAACTTGCTGCATCTCTCAAGTTCCCTT TAAAGAAGTTGTTTGTTGTAGACGGTTCCACAAGATCCAGCCACAGCAATTGCAAAGATGATGAGGAAATTGTAGCTGTTATTGCCCACGAACTGGGGCA TTGGAAACTTAATCATACAATGTACACATTCGTAGCAATGCAGATTCTTACTTTCCTGCAATTTGGAGGGTACACCCTTGTGAGGAATTCAACTGATCTG TTTAGAAGTTTTGGGTTTGATTCTCAGCCAGTACTTATCGGTTTGATCATATTTCAGCATATTATAATACCATTCCAGCATCTAGTGAGCTTTGGGCTTA ATCTCATTAGCAGATCTTTTGAATTTCAGGCTGATGCCTTTGCTAAGAAGCTTGGGTATGCTGTTCCCCTTCGTGCTGGACTAGTGAAACTCCAGGAAGA GAATCTGTCAGCGATGAACACGGATCCATGGTACTCGGCATATCACTACTCTCATCCTCCTTTGGTTGAAAGGCTGGCAGCACTTGATGAAGTGGAGGGT AAAAAGGATGAGTAA
AA sequence Show only first row Show all	>Lus10005123 pacid=23153399 polypeptide=Lus10005123 locus=Lus10005123.g ID=Lus10005123.BGIv1.0 annot-version=v1.0 MAIPFLELVVGFMIMMYIFETYLDLRQLAAYKLLTLPRPLKGVISQEKFEKSRAYSLDKSYYNFVHDFVSIVLDSAILWYGVLPWVWKKSESFLASVGLN AENEIILTLAFLGSMMMWSQITDLPFSLYSTFVIEARHGFNKQTIWMFIKDLFKGILLAVILGPPIVAAIIFIVQKGGPYLAIYLWAFMFVLSLVMMTIY PVLIAPLFNTFTPLPEGNLREKIEKLAASLKFPLKKLFVVDGSTRSSHSNCKDDEEIVAVIAHELGHWKLNHTMYTFVAMQILTFLQFGGYTLVRNSTDL FRSFGFDSQPVLIGLIIFQHIIIPFQHLVSFGLNLISRSFEFQADAFAKKLGYAVPLRAGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAALDEVEG KKDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Lus10005123 [exp]	0	1
AT3G23910			unknown protein		Lus10016653 [exp]	2.0	0.7154
AT1G18070			Translation elongation factor ...		Lus10018000 [exp]	2.4	0.7159
AT1G18070			Translation elongation factor ...		Lus10041996 [exp]	7.7	0.7062
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10041364 [exp]	12.0	0.6511
AT3G56570			SET domain-containing protein ...		Lus10026538 [exp]	19.9	0.6414
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10018666 [exp]	27.1	0.6978
AT2G19730			Ribosomal L28e protein family ...		Lus10006869 [exp]	27.9	0.6961
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10014756 [exp]	35.7	0.6613
AT4G28450			nucleotide binding;protein bin...		Lus10037378 [exp]	37.5	0.6603
AT3G44010			Ribosomal protein S14p/S29e fa...		Lus10039155 [exp]	39.0	0.6924

Compare expression of checked genes

Lus10005123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.