Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01500 329 / 7e-113 Erythronate-4-phosphate dehydrogenase family protein (.1) AT1G19400 198 / 5e-62 Erythronate-4-phosphate dehydrogenase family protein (.1.2) AT1G75180 185 / 8e-57 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) AT4G24110 44 / 5e-05 unknown protein AT5G04790 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007912 [exp] 412 / 7e-146 AT1G01500 350 / 1e-120 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10036394 [exp] 389 / 3e-137 AT1G01500 295 / 4e-100 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10016311 [exp] 166 / 2e-49 AT1G75180 353 / 2e-122 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10010803 [exp] 165 / 6e-49 AT1G75180 357 / 1e-123 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10042323 [exp] 151 / 1e-43 AT1G19400 238 / 3e-77 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10026339 [exp] 149 / 4e-43 AT1G19400 234 / 6e-76 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10018819 [exp] 0 / 1 AT1G01500 303 / 3e-102 Erythronate-4-phosphate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089600 [exp] 342 / 3e-118 AT1G01500 355 / 3e-123 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.002G163300 [exp] 333 / 8e-115 AT1G01500 354 / 1e-122 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.009G115800 [exp] 193 / 7e-60 AT1G75180 310 / 2e-105 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Potri.002G260900 [exp] 187 / 1e-57 AT1G75180 348 / 2e-120 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005124 pacid=23153414 polypeptide=Lus10005124 locus=Lus10005124.g ID=Lus10005124.BGIv1.0 annot-version=v1.0 ATGGGTCAGCAGCAGGAACAGGAACCCAATCCCTACACCATCATCTCCACCTCCTCCTCCCTCGAAATCCGCCTCTTCTACGTCCGAATCTCCCCTTGCG TCGTCGACACCGTCCCCGACCACCTCATCCTCCGCCATCTCCGCCGCCACACCAGCTCCGCTCTCGAGATCAACGGCTCACGGATCCCCGCCGTCGATTC CCCCTCTGTCACCCTCCGCCGGGACCGCCTTGACAAGGAGTCCTCCGAGGTCACCTACGTTAGCACTGACAGCGTCCGCGTTACCGGGGCGCTTGAATTC GAGGTCCTCGAGAATTCGGAATTGCTCCTCTGCGGATCCTTCGAGAGGATGGAGTCCGCTTGGGGGAACGATTCCAGGACCGGCTGGAGCATGGAGTGTT ACGTCGCCGCGTCGGTAGGGGAAGGGATCTCTCCCTTCTTCCAGCCTAGGAAAGGGGTGTCGGCTCCGGCGATTGAGGTTTATATTGCCGGCTGCTGCGG TGGGGTTCCCGTGATATTGACAAAGACGATTATGGTCAGCCCGAGGAAGAAGGTGTCCACCCTGGATGCAATTCCGGAAGATGAAGAGCTGGAGAAGGAA GAAGAGCAGGAGAAGCAGCGCATTGACGGTGGTAACAGTGCTTTGTCACCTCGCCTCCTCAAAATCCCGAGTAGTGAATCAGAAGATGATGAGTATGATG CGGAGATCAAACCTGGGATGAGATACTACTCTGAAGACATGTATTACGGTGAGGATGGGCAGCTCTCTTGGTTTAATGCCGGTGTTCGAGTTGGTGTGGG TATCGGCCTTGGTATGTGTGTAGGGGTAGGAATTGGGGTTGGACTTCTCATGCGCTCATATCAAGCAACTACCACCAACCTGAGGCGGAGATTCTTATAA
AA sequence Show only first row Show all	>Lus10005124 pacid=23153414 polypeptide=Lus10005124 locus=Lus10005124.g ID=Lus10005124.BGIv1.0 annot-version=v1.0 MGQQQEQEPNPYTIISTSSSLEIRLFYVRISPCVVDTVPDHLILRHLRRHTSSALEINGSRIPAVDSPSVTLRRDRLDKESSEVTYVSTDSVRVTGALEF EVLENSELLLCGSFERMESAWGNDSRTGWSMECYVAASVGEGISPFFQPRKGVSAPAIEVYIAGCCGGVPVILTKTIMVSPRKKVSTLDAIPEDEELEKE EEQEKQRIDGGNSALSPRLLKIPSSESEDDEYDAEIKPGMRYYSEDMYYGEDGQLSWFNAGVRVGVGIGLGMCVGVGIGVGLLMRSYQATTTNLRRRFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10005124 [exp]	0	1
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10002468 [exp]	2.0	0.7671
AT4G10925			Nuclear transport factor 2 (NT...		Lus10023064 [exp]	2.4	0.7957
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10032595 [exp]	8.9	0.7313
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10038734 [exp]	20.3	0.7412
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10003575 [exp]	21.4	0.7303
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10024188 [exp]	33.1	0.7190
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004671 [exp]	33.2	0.7392
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	38.5	0.6900
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10011900 [exp]	38.7	0.6812
AT3G51650			unknown protein		Lus10009100 [exp]	41.5	0.6935

Compare expression of checked genes

Lus10005124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.