Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01270 161 / 1e-44 RING/U-box superfamily protein (.1) AT4G01245 64 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005127 [exp] 747 / 0 AT4G01270 352 / 1e-115 RING/U-box superfamily protein (.1) Lus10018817 [exp] 717 / 0 AT4G01270 360 / 2e-118 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089800 [exp] 289 / 7e-93 AT4G01270 381 / 8e-127 RING/U-box superfamily protein (.1) Potri.002G164000 [exp] 66 / 8e-12 AT4G01270 121 / 2e-30 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005126 pacid=23153401 polypeptide=Lus10005126 locus=Lus10005126.g ID=Lus10005126.BGIv1.0 annot-version=v1.0 ATGGCTTTAGCCAAAGAACTTGCAGCACTTAAACTGGCGTCAGACCTGAACCTGGACGAAGATGAGATTTTAAAACTTGCTTCGTTTGGTAATGAGGCTA ATGCTAAACATACTATCGACATTCTCCGGAAGTCCCTGGCTACTCGCAACAAGAGCTACCAAGAGTTAATGGCCAAGTGCATCCAGCTTGGAAGAGGAGA GGCTCGTTCTACTAGAAAACTAGAGAAGGCTAAAGACAAGATAACTAGGTTGAAATCTAGGATTCAGGAAGTGGAGATGGCTGTTGAACTAAAGGAGAAT CAAGCTTTAAGGCTCTTAAAGACTTCAAATGAGACAAATTCAAGAAACAAGGTTTCTGGTGAACTTGATGATAAATCTTGTACACCGACTTCTGATCTCT TTCGATCTAGAAATGAAATGGGGAAAGCATCATCTGCATCTCTGGATTGCTTGGTTGAAACTCAGAGCTTGGGTGGTAACGCAAACAAAAGAAGACATTT TTCCAACAATAAAGCTGGTGCAAATTTTTCAAACAGTCCTTTAGGTGATCTGTCGTCTGGTGAAAGGATAAACAATTGCATTATCATTGATGAGGATGCT TTACCAAGTTCTCCAGCTCTATCAGTACATCGAAATCTTGATTTGAAACATACAGCTGGGAAACAAGAAACTAAAGTGAATTCACACGACAAGGCAGGAA CTGACTCAGTTCCTTTTATTATAATCAATGAGGATAAAGACTGCACAAACTTAGCTAATGGAGTTGAGGAAGCCTCTGTTTCTTTGGGTCACAAGAACGA AGTCTGCCCCACGATCAACATTAGAAAGGAGTGCTCATCTTCAAAACCAGATATCTGTTTCTCAAGCGGATTACTGGGCCCTGATGGAACAACTCGGTAT CTGGGGAGGTGGTGTAAACGTGTTCCAAGTAAGGACCCAGATGCCGTGCAGAGCACAAGTACAAACAACAGGGACTTGATTGCTGTTGGAGCTGATGGAA GGGGTGGCAGAGTTAAAGTCTTAAGGCCTCTGAATCAAGCCCTCATGGGTGGTTCAGAGAACTCCATGCCCTCCAAGAAGTGCAAAATAGGAGTAAAAAC AAGTAGTGCGCCATCTCGGGGATGTTTGCAGATGGAACATTTCTTTGGGAAGTCCAAGCAGTAG
AA sequence Show only first row Show all	>Lus10005126 pacid=23153401 polypeptide=Lus10005126 locus=Lus10005126.g ID=Lus10005126.BGIv1.0 annot-version=v1.0 MALAKELAALKLASDLNLDEDEILKLASFGNEANAKHTIDILRKSLATRNKSYQELMAKCIQLGRGEARSTRKLEKAKDKITRLKSRIQEVEMAVELKEN QALRLLKTSNETNSRNKVSGELDDKSCTPTSDLFRSRNEMGKASSASLDCLVETQSLGGNANKRRHFSNNKAGANFSNSPLGDLSSGERINNCIIIDEDA LPSSPALSVHRNLDLKHTAGKQETKVNSHDKAGTDSVPFIIINEDKDCTNLANGVEEASVSLGHKNEVCPTINIRKECSSSKPDICFSSGLLGPDGTTRY LGRWCKRVPSKDPDAVQSTSTNNRDLIAVGADGRGGRVKVLRPLNQALMGGSENSMPSKKCKIGVKTSSAPSRGCLQMEHFFGKSKQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01270			RING/U-box superfamily protein...		Lus10005126 [exp]	0	1
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	1.0	0.8971
AT1G61000			unknown protein		Lus10012690 [exp]	3.2	0.8833
AT1G80190		PSF1	partner of SLD five 1 (.1)		Lus10036085 [exp]	4.2	0.8569
AT4G39380			unknown protein		Lus10033530 [exp]	4.9	0.8687
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	6.2	0.8829
AT1G72090			Methylthiotransferase (.1)		Lus10016926 [exp]	6.7	0.8364
AT3G13226			regulatory protein RecX family...		Lus10032955 [exp]	7.1	0.8295
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10006266 [exp]	7.4	0.8679
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10001185 [exp]	13.8	0.8099
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10003268 [exp]	16.9	0.8469

Compare expression of checked genes

Lus10005126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.