Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01270 330 / 4e-107 RING/U-box superfamily protein (.1) AT4G01245 63 / 6e-12 unknown protein AT4G11360 43 / 0.0001 RHA1B RING-H2 finger A1B (.1) AT5G41440 42 / 0.0001 RING/U-box superfamily protein (.1) AT3G58720 44 / 0.0002 RING/U-box superfamily protein (.1.2) AT4G11370 42 / 0.0003 RHA1A RING-H2 finger A1A (.1) AT1G32361 43 / 0.0004 ATL1F RING/U-box superfamily protein (.1) AT1G18770 40 / 0.0004 RING/U-box superfamily protein (.1) AT4G12210 42 / 0.0006 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018817 [exp] 1030 / 0 AT4G01270 360 / 2e-118 RING/U-box superfamily protein (.1) Lus10005126 [exp] 748 / 0 AT4G01270 179 / 1e-51 RING/U-box superfamily protein (.1) Lus10034953 [exp] 42 / 0.0008 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10016541 [exp] 41 / 0.0008 AT5G57750 68 / 2e-14 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G089800 [exp] 499 / 2e-172 AT4G01270 381 / 8e-127 RING/U-box superfamily protein (.1) Potri.002G164000 [exp] 164 / 1e-45 AT4G01270 121 / 2e-30 RING/U-box superfamily protein (.1) Potri.010G245801 [exp] 44 / 6e-05 AT2G27940 61 / 1e-11 RING/U-box superfamily protein (.1) Potri.001G400600 [exp] 42 / 0.0003 AT2G20650 59 / 8e-11 RING/U-box superfamily protein (.1.2) Potri.016G067900 [exp] 42 / 0.0003 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1) Potri.006G201500 [exp] 42 / 0.0004 AT2G35910 122 / 4e-35 RING/U-box superfamily protein (.1) Potri.005G127900 [exp] 42 / 0.0006 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.014G139400 [exp] 42 / 0.0007 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10005127 pacid=23153407 polypeptide=Lus10005127 locus=Lus10005127.g ID=Lus10005127.BGIv1.0 annot-version=v1.0 ATGACTAATTCCTTCACCAAAACAATCTGCTCAATCTGCTACGAAGATCTCAAGCCAATCGTCGAGGATCTTCAAGTAATCTCCATCTGTGGCCATGTCT TACACGAACTTTGCTTGCAGCAATGGTTCGAATACTGTCCTGGAAAAAAGAAGTATAGCTGTCCCGTTTGCAAGCAGAGATGCCAAGCCTCCGATGTGGC CCGGCTGTATTTCCAGTCACTGGGGGATTCCGCGGTGTCACAGTGCCAGGAGACGGTGTTAGATCCTGAGTTGCTTGATGGAGAGATTAGGAGATTACAG GGGAAAGTGTCAGGGCTCACTTCCACTGTAGATACTCAGGGGAAGGAAATTAAGCGGCTTCATGGAGAGTTGTATGATTGCAAGGAGCAGCTGAAGGCTG AACTTGTCTTGAAGAATGAAGTGGTGCAGCAGAAAGCATTAGTGCAAGAGACGCTTCTTTTTAAATCGCAGGAGCTTAATGAATTGAAGACGGAGCATTC AAAGTTACAAGAGAGGAGCATGGCTTTAGCCAAAGAACTTGCAGCACTTAAACTGGCGTCAGACCTGAACCTGGACGAAGATGAGATTTTAAAACTTGCT TCGTTTGGTAATGAGGCTAATGCTAAACATACTATCGACATTCTCCGGAAGTCCCTGGCTACTCGCAACAAGAGCTACCAAGAGTTAATGGCCAAGTGCA TCCAGCTTGGAAGAGGAGAGGCTCCTTCTACTAGAAAACTAGAGAAGGCTAAAGACAAGATAACTAGGTTGAAATCTAGGATTCAGGAAGTGGAGATGGC TGTTGAACTAAAGGAGAATCAAGCTTTAAGGCTCTTAAAGACTTCAAATGAGACAAATTCAAGAAACAAGGTTTCTGGTGAACTTGATGATAAATCTTGT ACACCGACTTCTGATCTCTTTCGATCTAGAAATGAAATGGGGAAAGCATCATCTGCATCTCTGGATTGCTTGGTTGAAACTCAGAGCTTGGGTGGTAACG CAAACAAAAGAAGACATTTTTCCAACAATAAAGCTGGTGCAAATTTTTCAAACAGTCCTTTAGGTGATCTGTCGTCTGGTGAAAGGATAAACAATTGCAT TATCATTGATGAGGATGCTTCACCAAGTTCTCCAGCTCTATCAGTGCATCGAGATCTTGATTTGAAACATTCAGCTGGGAAACAAGAAACCAAAGTGAAT TCACACGACAGGGCAGGAACTGCCTCAGTTCCTTTTATTATAATCAATGAGGATAAAGACTGTACAAACTTAGCTAATGGAGTTGAGGAAGCCTCTGTTT CTTTGGGTCCAAAGAACGAAGTCTGTCCCACGATCAACATTAGAAAGGAGTGCTCATCTTCAAAACCAGATATCTGTTTCTCAAGCGGATTACTGGGCCC TGATGGAACAACTCGGTATCTGGGGAGGTGGTGTAAACGTGTTCCAAGTAAGGACCCAGATGCCGTGCAGAGCACAAGTACAAACAACAGGGACTTGATT GCTGTTGGAGCTGATGGAAGGGGTGGCAGAGTTAAAGTCTTAAGGCCTCTGAATCAAGCCCTCATGGGTGGTTCAGAGAACTCCATGCCGGCGAAGAAGT GCAAAATAGGAGTAAAAACAAGTAGTGCGCCATCTCGGGGATGTTTGCAGATGGAACATTTCTTTGGGAAGTCCAAGCAGTAG
AA sequence Show only first row Show all	>Lus10005127 pacid=23153407 polypeptide=Lus10005127 locus=Lus10005127.g ID=Lus10005127.BGIv1.0 annot-version=v1.0 MTNSFTKTICSICYEDLKPIVEDLQVISICGHVLHELCLQQWFEYCPGKKKYSCPVCKQRCQASDVARLYFQSLGDSAVSQCQETVLDPELLDGEIRRLQ GKVSGLTSTVDTQGKEIKRLHGELYDCKEQLKAELVLKNEVVQQKALVQETLLFKSQELNELKTEHSKLQERSMALAKELAALKLASDLNLDEDEILKLA SFGNEANAKHTIDILRKSLATRNKSYQELMAKCIQLGRGEAPSTRKLEKAKDKITRLKSRIQEVEMAVELKENQALRLLKTSNETNSRNKVSGELDDKSC TPTSDLFRSRNEMGKASSASLDCLVETQSLGGNANKRRHFSNNKAGANFSNSPLGDLSSGERINNCIIIDEDASPSSPALSVHRDLDLKHSAGKQETKVN SHDRAGTASVPFIIINEDKDCTNLANGVEEASVSLGPKNEVCPTINIRKECSSSKPDICFSSGLLGPDGTTRYLGRWCKRVPSKDPDAVQSTSTNNRDLI AVGADGRGGRVKVLRPLNQALMGGSENSMPAKKCKIGVKTSSAPSRGCLQMEHFFGKSKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	0	1
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10020167 [exp]	2.8	0.8949
AT1G20720			RAD3-like DNA-binding helicase...		Lus10016027 [exp]	3.0	0.9145
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Lus10036151 [exp]	3.3	0.9367
AT4G39380			unknown protein		Lus10033530 [exp]	3.7	0.8949
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035991 [exp]	4.2	0.9157
AT3G20070		TTN9	titan9 (.1.2)		Lus10026248 [exp]	4.5	0.9108
AT3G48540			Cytidine/deoxycytidylate deami...		Lus10022452 [exp]	5.3	0.8817
AT4G01270			RING/U-box superfamily protein...		Lus10005126 [exp]	6.2	0.8829
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10017804 [exp]	7.1	0.8778
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	8.1	0.8962

Compare expression of checked genes

Lus10005127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.