Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005128 pacid=23153408 polypeptide=Lus10005128 locus=Lus10005128.g ID=Lus10005128.BGIv1.0 annot-version=v1.0 ATGGGGAACGCCCATCCCACCAGAATCTCACATTCCCCGCGTTACTTCCCCGCCGATCACAAGACACCGTTGCTGCACGCCAAGTCGCCGCCGCCGGTCC TGCCCTGCCAATTCCTTCTTGAGGACAATCATCCACCGCCGTCTGAAGACCGCCTGGCTGATCGGATTGCAATCAGCCAGCTCAAACTCCGGGTTTCAAT CCTCGAATTCAATACGAACTCAAAGCTGCCACCATCATCATCATCATCCACCCCGGTCCCTGATCTCATCGACATGGACAATAATATAAACGACGACTGC AACAACTGCTATTCAGTGCAACCGTTTGAATCTCTCATCAGTGTGAAGAGTAATTTGACAGTGGCCAAGAGAAATAACTATAACCCTGACTCTGTTCATA GAGAGATTGATTTGAATCTTCATGTGATGCACTTCGGATACCTGCTCCTGATTTTCCTTCTGTCATTGTCCGTCGGTTTTCTGCTTTAG
AA sequence Show only first row Show all	>Lus10005128 pacid=23153408 polypeptide=Lus10005128 locus=Lus10005128.g ID=Lus10005128.BGIv1.0 annot-version=v1.0 MGNAHPTRISHSPRYFPADHKTPLLHAKSPPPVLPCQFLLEDNHPPPSEDRLADRIAISQLKLRVSILEFNTNSKLPPSSSSSTPVPDLIDMDNNINDDC NNCYSVQPFESLISVKSNLTVAKRNNYNPDSVHREIDLNLHVMHFGYLLLIFLLSLSVGFLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005128 [exp]	0	1
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Lus10030035 [exp]	2.4	0.8504
AT3G46600	GRAS		GRAS family transcription fact...		Lus10040789 [exp]	8.9	0.8356
AT1G54540			Late embryogenesis abundant (L...		Lus10031317 [exp]	9.5	0.8585
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10021696 [exp]	10.2	0.8522
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10039627 [exp]	11.1	0.8597
					Lus10011553 [exp]	19.5	0.8539
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10020767 [exp]	20.7	0.8463
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039401 [exp]	21.2	0.7707
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10007344 [exp]	28.1	0.8328
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032415 [exp]	31.5	0.8495

Compare expression of checked genes

Lus10005128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.