Plant FIBer expression Database

Lus10005129 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05950 222 / 8e-64 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G127800
[exp]
286 / 4e-87 AT1G05950 353 / 1e-112 unknown protein
PFAM info
Representative CDS sequence
>Lus10005129 pacid=23153412 polypeptide=Lus10005129 locus=Lus10005129.g ID=Lus10005129.BGIv1.0 annot-version=v1.0
ATGGAGGGAACACAAGTTTGTTCGACGGAGGATTCCATTATTGCACTGCTAGAACGACTCGTCGAACCAAAGCTACCGGCGAAATCTGGTCTCAAGTTCA
TACCCTGTCAATCTGATGAGGAAGTCATGGCAAAACAGATGCACGCGGTTGCACTGCTGTACAATTACTACCACAGGAGGCAGCACCCACAACTGGAATT
CATGAATTTCGAGAGTTTCTGCAAATTGGCTGTGATACAGAAGCCCAATGTACTATCCTACATGAAGCTTACACATGGGTCGAGTGACACCCAGCTGGAC
AATCAAGAAGAGCAGCTTTCTTTGACAGAGAAAAAAATTGTGAATGCTTGTAACGTAGCAATGTCGCTGGATGCATCCAAAGTTACTCCAATTGTGCATC
AAACTGCTGTTTCCAAAGTGGCTGTTCTTCTGGTGGATTCTGAGAAGCAGAATGCCCTGCTGCAGTTTGGTTCAGTCACTGAAGGTGTGTGGTCAGCGAT
TGAAAAGGAGGTGGAGGTTGTTATGGCAAACTCCAGCAGCTCAATGGATTCTAACAAAAAGAGGAGAGTTCTTAAAGGACCCGCCAAACGTGAGGGTGGC
ACTAGTGAAGCTGCCTTAAAGAAAACGGCTACTTTAGCTGTTAAGGAAGCCACAGGAATTCCAGAGGATGATCTTGCTGTCTTGGAGAGCTATATCGTGT
ACTCCACAAGTAAAGAAAATACCTCCACGCGCTTTTACATCTTACAGTGCACTAAAGCAGATGACGATACTGTTCATCCAGTTCCCATCAAAGATTTGAT
TAAAAGTTTGCAGGGCCCCCTGTTCTCGAGAAGTTGCTCTCAATGGATAACGACACCTGTTGTTGACTACTTTCATTTGCTTCCTTTCGCTCGGATTCTT
GCAGACTGGTCGAACTCTGCATCCAGTTACAGCAGTAAGAACTCCGAATCAGCAAAGAGGAACAATGTATCTGGACCGCTGATGCACAAGGATGAAAATG
TGAATCCCGAGACAGCAAAGTCGAATGCCTGTGATGAAAGTTCAATGACTGGTGGTGGTCTTCCTAACTTGTCCGATGGGTCCCTCAATATGGAACTTGA
CACAATACCAGTCAACAAATTGGAAAATGAAGACATGTGTAGAGATGTTGCCGAGGGAATGAAACCTGGCAACCAAAAGATTGAGAGTTCAAGTGGCTTG
ATAACTTCTGAGAAGGCCAAGACAATAAATACTCAGACGGTCATCAGGAGTGATGAGAAGTTGAAGAATTCTTCTGTAGATCCTGATTCAATGCCTGTCA
TTCATGGTCCAGTGGTTACTCATAAGTGGAACGATGAAGACATTGGAAAGATGTTGTCTGTCGTAGCTTCAAAAGATAAGGAACTCTCAGAAGCAGCACT
GAAGGTGCTCCTCAGGAAAAGAGATGAACTGTCATATCAGCAACGAGACATGGAAGATCAGATTGCACAACACGATAAGAAGATCCAGACACTCTTGGAT
GGGAATGGTGATGTGGCACTGAAGATTGCAGCCTTGCTCGAAATTTGCGAGGATACATCATTCCTAAGAAGTTTGTCCAGGAGGAATCAATCCCCAGGTG
AAGGCAATGGAAACAAGAGAATGTCGGGGGCAAACGGAGATGACTGCCATAGACTTTCATCGTGCCAGGCATTGGACGATTTATGCTGGGAAAGAAACTG
GATTCTGCCAACATATCGCGTAGCATCTGTAAAAGGTGGGTTCGTAGCCAGTGTGGTTGTGAAAGGGGATAAGTCTGAGTGGTCTGCAGCTGGATGTGAG
GTAGGCATCAACCCAACAATGGCGAGGGAGTTGGTAGCAGAGCAGGTATTGGGGAAGATACGCGCACAATCAGCAGCAGCCTCTTGA
AA sequence
>Lus10005129 pacid=23153412 polypeptide=Lus10005129 locus=Lus10005129.g ID=Lus10005129.BGIv1.0 annot-version=v1.0
MEGTQVCSTEDSIIALLERLVEPKLPAKSGLKFIPCQSDEEVMAKQMHAVALLYNYYHRRQHPQLEFMNFESFCKLAVIQKPNVLSYMKLTHGSSDTQLD
NQEEQLSLTEKKIVNACNVAMSLDASKVTPIVHQTAVSKVAVLLVDSEKQNALLQFGSVTEGVWSAIEKEVEVVMANSSSSMDSNKKRRVLKGPAKREGG
TSEAALKKTATLAVKEATGIPEDDLAVLESYIVYSTSKENTSTRFYILQCTKADDDTVHPVPIKDLIKSLQGPLFSRSCSQWITTPVVDYFHLLPFARIL
ADWSNSASSYSSKNSESAKRNNVSGPLMHKDENVNPETAKSNACDESSMTGGGLPNLSDGSLNMELDTIPVNKLENEDMCRDVAEGMKPGNQKIESSSGL
ITSEKAKTINTQTVIRSDEKLKNSSVDPDSMPVIHGPVVTHKWNDEDIGKMLSVVASKDKELSEAALKVLLRKRDELSYQQRDMEDQIAQHDKKIQTLLD
GNGDVALKIAALLEICEDTSFLRSLSRRNQSPGEGNGNKRMSGANGDDCHRLSSCQALDDLCWERNWILPTYRVASVKGGFVASVVVKGDKSEWSAAGCE
VGINPTMARELVAEQVLGKIRAQSAAAS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G05950 unknown protein Lus10005129
[exp]
0 1
AT3G07750 3'-5'-exoribonuclease family p... Lus10012336
[exp]
5.2 0.8915
AT3G26660 AS2 LBD24 LOB domain-containing protein ... Lus10023591
[exp]
7.7 0.8805
AT1G26680 B3 REM17 transcriptional factor B3 fami... Lus10026921
[exp]
8.5 0.8770
AT3G61250 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb d... Lus10014784
[exp]
21.2 0.8746
AT2G45190 YABBY FIL, YAB1, AFO YABBY1, FILAMENTOUS FLOWER, AB... Lus10032240
[exp]
25.8 0.8758
Lus10006724
[exp]
27.3 0.8758
AT2G45190 YABBY FIL, YAB1, AFO YABBY1, FILAMENTOUS FLOWER, AB... Lus10024603
[exp]
33.6 0.8751
AT1G16290 unknown protein Lus10036958
[exp]
34.1 0.8695
Lus10001722
[exp]
34.5 0.8205
AT5G04530 KCS19 3-ketoacyl-CoA synthase 19 (.1... Lus10023458
[exp]
39.1 0.8692

Lus10005129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.