Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 359 / 3e-123 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 300 / 8e-100 O-methyltransferase family protein (.1) AT1G51990 275 / 5e-90 O-methyltransferase family protein (.1.2) AT1G33030 272 / 4e-89 O-methyltransferase family protein (.1) AT1G21130 260 / 3e-84 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G77530 260 / 4e-84 O-methyltransferase family protein (.1) AT1G21110 258 / 2e-83 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1) AT1G21100 258 / 4e-83 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G63140 258 / 5e-83 O-methyltransferase family protein (.1.2) AT1G21120 256 / 8e-83 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002667 [exp] 597 / 0 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10002669 [exp] 506 / 0 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10006146 [exp] 438 / 3e-154 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10032929 [exp] 358 / 1e-122 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 358 / 2e-122 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10030188 [exp] 318 / 2e-108 AT5G54160 213 / 9e-68 O-methyltransferase 1 (.1) Lus10009442 [exp] 249 / 6e-80 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10014825 [exp] 230 / 7e-73 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1) Lus10014400 [exp] 196 / 3e-59 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G106600 [exp] 447 / 1e-157 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 434 / 1e-152 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 434 / 1e-152 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 434 / 1e-152 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 433 / 4e-152 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 423 / 1e-148 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 368 / 2e-126 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 368 / 2e-126 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.014G106500 [exp] 324 / 4e-109 AT5G54160 349 / 8e-119 O-methyltransferase 1 (.1) Potri.001G451100 [exp] 300 / 6e-100 AT5G54160 384 / 7e-133 O-methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10005133 pacid=23141924 polypeptide=Lus10005133 locus=Lus10005133.g ID=Lus10005133.BGIv1.0 annot-version=v1.0 ATGGCAGCTGCCCAAAACGTCGCCGTAAGAGACGAAGATCAAAACGAGAGCTTTCTATACGCAATGCAGCTGGTGATGCAGTCAGTGGTTCCCATGACAC TGCATGCTGCCAACGAGCTCGGAATCTTCGATGTGATAGCTGCTGCAGAGGCCGCTGGGGCGAAACTCAGCGCCTCTGAGATCGCGTCCAAGTTGGATTC GAAGTGCACAGTGACGAATCCTGATGCTCCGGTCATGGTTGACCGTATTTTATGGCTAATGGGTAGTCATTCGATTGTGGATTGCACGACAGAGGACGAT GGGTCCGGCCAGAAGCAGAGAAAGTATGGGATGAACTCTGTTTCCAAGTACTTTGTGAAGAATGAAAATGGTGTTTCTTTGGCTCCCATGATGTCGTTGA TTCAAGATAAGGTGTTCTTGGACAGCTGGCCTGAGCTAAAGAATGCGGTGTTAGAAGGAGGAGTTCCATTCGACAGAGTTCATGGTGTTCACGCTTTCGA GTATCCGAGACTTGATCAGAAGTTCAATCGAGTTTTCAATGCAGCAATGTTCAACCAGTCGACCATGGTTATAAAACAAGTTCTTGATTCCTACAAAGGA TTCGAACCGTTAAACAGCGTCGTGGATGTCGGGGGCGGATTAGGACATACCATGAAGGCTGTTACTTCCAAGTACCCACATATTAAAGGCATCAACTTTG ACTTGCCTCATGTTGTAAACCAGGCTCCTAATATTCCAGGTGTGGAGAATGTATCAGGAGATATGTTTGAATCTGTTCCACAAGGAGATGCCATCTTTAT GAAGTGGATACTCCACGATTGGAGTGATGCACATTGTTTGACGCTATTGAAGAACTGTTATAATGCCACTCCAGAGGAGGGAAAGGTCATAGTCATGGAT GCGGTAGTTCCAGTGATGGTGGAGACAACCACAAGCTCGAAATTAACTGCTCAGATTGATGTGTTGATGATGACACAAAATCCAGGGGGGAAGGAAAGAA CTAAAGACGAGTTCATGTCACTAGCAACCGGAGCTGGTTTCAAAGGGATTCGGCTCAAGTTACATGTTTGTAACTTTTGGGTGATGGAGTTCTACAAATG A
AA sequence Show only first row Show all	>Lus10005133 pacid=23141924 polypeptide=Lus10005133 locus=Lus10005133.g ID=Lus10005133.BGIv1.0 annot-version=v1.0 MAAAQNVAVRDEDQNESFLYAMQLVMQSVVPMTLHAANELGIFDVIAAAEAAGAKLSASEIASKLDSKCTVTNPDAPVMVDRILWLMGSHSIVDCTTEDD GSGQKQRKYGMNSVSKYFVKNENGVSLAPMMSLIQDKVFLDSWPELKNAVLEGGVPFDRVHGVHAFEYPRLDQKFNRVFNAAMFNQSTMVIKQVLDSYKG FEPLNSVVDVGGGLGHTMKAVTSKYPHIKGINFDLPHVVNQAPNIPGVENVSGDMFESVPQGDAIFMKWILHDWSDAHCLTLLKNCYNATPEEGKVIVMD AVVPVMVETTTSSKLTAQIDVLMMTQNPGGKERTKDEFMSLATGAGFKGIRLKLHVCNFWVMEFYK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10005133 [exp]	0	1
AT4G24630			DHHC-type zinc finger family p...		Lus10033527 [exp]	1.0	0.8252
AT1G26260	bHLH	CIB5, bHLH076	cryptochrome-interacting basic...		Lus10023562 [exp]	10.1	0.7634
AT5G44005			unknown protein		Lus10003608 [exp]	11.0	0.7478
AT3G01750			Ankyrin repeat family protein ...		Lus10022330 [exp]	13.4	0.7405
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10028078 [exp]	13.6	0.7465
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10025110 [exp]	14.3	0.7266
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	15.0	0.7462
AT3G13000			Protein of unknown function, D...		Lus10034787 [exp]	22.2	0.7272
AT5G50150			Protein of Unknown Function (D...		Lus10027683 [exp]	23.7	0.7332
AT1G73850			Protein of unknown function (D...		Lus10038936 [exp]	24.2	0.7338

Compare expression of checked genes

Lus10005133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.