Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61960 607 / 0 Protein kinase superfamily protein (.1.2) AT2G37840 370 / 9e-119 Protein kinase superfamily protein (.1.2) AT3G53930 360 / 5e-115 Protein kinase superfamily protein (.1.2) AT1G49180 256 / 4e-79 protein kinase family protein (.1.2) AT2G30360 187 / 1e-52 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT1G30270 182 / 1e-50 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT3G01090 181 / 8e-50 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT2G45490 173 / 4e-49 ATAUR3 ataurora3 (.1) AT4G18700 177 / 1e-48 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT3G29160 174 / 1e-48 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030182 [exp] 1198 / 0 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022593 [exp] 363 / 6e-116 AT2G37840 855 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021493 [exp] 358 / 7e-114 AT2G37840 848 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033518 [exp] 303 / 2e-98 AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) Lus10020855 [exp] 257 / 1e-78 AT1G49180 333 / 2e-111 protein kinase family protein (.1.2) Lus10038889 [exp] 182 / 4e-50 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10015009 [exp] 180 / 3e-49 AT1G12580 549 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10042816 [exp] 178 / 3e-49 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10012696 [exp] 179 / 8e-49 AT3G01090 905 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G107000 [exp] 741 / 0 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G181000 [exp] 710 / 0 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G104900 [exp] 364 / 1e-116 AT2G37840 850 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G092900 [exp] 362 / 9e-116 AT2G37840 874 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G011600 [exp] 301 / 2e-97 AT1G49180 352 / 9e-121 protein kinase family protein (.1.2) Potri.019G007200 [exp] 300 / 3e-97 AT1G49180 353 / 1e-121 protein kinase family protein (.1.2) Potri.019G011300 [exp] 270 / 4e-86 AT1G49180 331 / 2e-113 protein kinase family protein (.1.2) Potri.004G115900 [exp] 181 / 9e-50 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.011G067600 [exp] 180 / 3e-49 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.017G087900 [exp] 179 / 3e-49 AT3G01090 880 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005135 pacid=23141919 polypeptide=Lus10005135 locus=Lus10005135.g ID=Lus10005135.BGIv1.0 annot-version=v1.0 ATGGATCATCAGCGGACTCGCTCGATCGGCGACTACGCAATCGGGGCAAGACTCGGTTCGGGCTCGTTCGCCGTCGTGTGGCGGGCCAGCCACCGGGTCT CGGGTCATGATGTTGCGGTGAAGGAGATTGATAAGAAGCAGCTGAATCCCATCCTTAGCGCCAATTTGCGCAAGGAGATTTCCATTCTCGGTACCATTCG TCATCCCAACATTATTCGTCTTTACGACGCTTTCGAGACGCCGGATAGGATTTATCTGATACTGGAGTACTGCGACGGTGGCGATTTGGCTCAGTATCTT CATCGCCATGGGAAGGTCTCTGAGCTTGTTGCTAGGCACTTCTTGAAGCAATTAGCTGCAGGATTGCAAGTGTTACAAGAGAAACATGTAATCCACAGGG ACTTGAAACCACAGAATCTGCTATTGGCATCCAATGAGGAAACTCCAGTGTTGAAGATAGGGGATTTTGGTTTTGCTAGGTCCTTGAATCCGAACGACAT GGCTGATACACTTTGTGGATCTCCTCTATACATGGCCCCAGAGATCATTCAGAATAGAAAGTATGATGCCAAGGCTGATTTATGGAGCGTCGGCGCAATT CTATTCCAGCTGGTGACAGGCAGACCACCGTTTCAAGGAAATAGTCAATTTCAGCTCTTTCAGAACATTTTGAGGTCGACCGAGCTGCAGTTTCCAGACG GTGCTTTAGAGACTCTGCATCCCAACTGTGTTGATCTGTGCAGGAGTCTTTTACGCCACAATCCAGTTGAACGACTAACCTTCCAGGAGTTCTTCAATCA TAACTTCTTACAGGAGCCTAGACTAATTGCTGATGTAGATCAGTCTTCTCTTCTCCCACTAACGAAATTAGCGGATGAGCCGTCTCGTGATAAGAGCCTA CAGGTGCATCCTGACCATCTCATTTGTTCTGGTTTGGGTAATCTAAAGTTAGCAGCTCAATCCGCCACTGAGAACAAAAGACAACATGGTAAAGACGTGG AGAAATCTATTTCGTCAATGGATCAGCCTCAAGTTGCTGACTGCTTGGAGTCCATTGAGAAAGATTATGTTCTTGTCTATCGTCACGTTACTTCAAGGGA GAACATCTCCTATTACCTTGCAACGTCCTTACAAGAAAACTCCAATGTCAGAGTGTCTGTATGTGGACCACAAGCCGAGAAGAACAACAATGATGATACT TTGGCAAATGCTTCGCCTTCAAAAGAGGTTGATGCTGATTCCGCTCATAGCATGGAGAATACAGAAGTCCAAGAATCAGATCCCTTAAAGACATCATGCA ATATCAGTGCATCAAAGGAACTTCAAAGTTTGTCGGTATTACATCCGTCAACTAGGCTCCTCTTGTTACGGCAATATCTTCAGGCAGTTTCGGAATTGGT TGATGAAAAGTACAAGGCAGAAAAATACCCGGAAGCATTTTCACTTGAACTGGTAGTTTTAGCTGCATGGAAGAAATCAGTTGAGATTTGTGGCTCCTGG CTAGCTTCAACTTCTGGAAATGAATCACCTGGAAGCTCAGATACGCCTACAGATAAATCAGATTTTGAGGGGCCATACTCTGCGAGCAAATGGGCGGAAC AAGGGTTTATTTCAGCACTTGATCATGGGGAGAAATTGTCCGGACACCTCAAAAGCTTGGATGCCAAAGCAGAGATGCCCGACGCGATGGAGATTATATT TCAGAAGGCGCTAGCTCTAGGGACAGACGGAGGGGTGGACGAATACATGGGGAACAAGGCGAAGGCTGCTGCCTCATACTCCAAAGCCTTGCTGCTCTTT TCTTTCGTAGTCGGAGAAGCAACTTCTCTGGCGCTGACTCCTCCGTTCACGCTGACTCCTGCTAATCGCCAGCGAATTCATAGCTACATGAGGAACTTAC AGACTCACCAATCGAAGTTACCGACCTGA
AA sequence Show only first row Show all	>Lus10005135 pacid=23141919 polypeptide=Lus10005135 locus=Lus10005135.g ID=Lus10005135.BGIv1.0 annot-version=v1.0 MDHQRTRSIGDYAIGARLGSGSFAVVWRASHRVSGHDVAVKEIDKKQLNPILSANLRKEISILGTIRHPNIIRLYDAFETPDRIYLILEYCDGGDLAQYL HRHGKVSELVARHFLKQLAAGLQVLQEKHVIHRDLKPQNLLLASNEETPVLKIGDFGFARSLNPNDMADTLCGSPLYMAPEIIQNRKYDAKADLWSVGAI LFQLVTGRPPFQGNSQFQLFQNILRSTELQFPDGALETLHPNCVDLCRSLLRHNPVERLTFQEFFNHNFLQEPRLIADVDQSSLLPLTKLADEPSRDKSL QVHPDHLICSGLGNLKLAAQSATENKRQHGKDVEKSISSMDQPQVADCLESIEKDYVLVYRHVTSRENISYYLATSLQENSNVRVSVCGPQAEKNNNDDT LANASPSKEVDADSAHSMENTEVQESDPLKTSCNISASKELQSLSVLHPSTRLLLLRQYLQAVSELVDEKYKAEKYPEAFSLELVVLAAWKKSVEICGSW LASTSGNESPGSSDTPTDKSDFEGPYSASKWAEQGFISALDHGEKLSGHLKSLDAKAEMPDAMEIIFQKALALGTDGGVDEYMGNKAKAAASYSKALLLF SFVVGEATSLALTPPFTLTPANRQRIHSYMRNLQTHQSKLPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61960			Protein kinase superfamily pro...		Lus10005135 [exp]	0	1
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	2.2	0.9010
AT2G42490			Copper amine oxidase family pr...		Lus10026696 [exp]	4.8	0.8485
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	5.5	0.8847
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018126 [exp]	5.5	0.8898
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10042101 [exp]	6.0	0.8889
AT2G01460			P-loop containing nucleoside t...		Lus10027063 [exp]	6.5	0.8952
AT4G10930			unknown protein		Lus10023068 [exp]	12.3	0.8717
AT1G11060			WAPL (Wings apart-like protein...		Lus10001211 [exp]	13.5	0.8741
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10036677 [exp]	14.5	0.8685
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	14.8	0.8654

Compare expression of checked genes

Lus10005135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.