Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 454 / 7e-149 S-locus lectin protein kinase family protein (.1) AT1G11410 431 / 1e-140 S-locus lectin protein kinase family protein (.1) AT4G21380 388 / 4e-124 ARK3 receptor kinase 3 (.1) AT1G65800 374 / 1e-118 ARK2 receptor kinase 2 (.1) AT1G61610 363 / 7e-115 S-locus lectin protein kinase family protein (.1) AT1G65790 355 / 1e-111 ARK1 receptor kinase 1 (.1) AT1G11330 348 / 3e-109 S-locus lectin protein kinase family protein (.1.2) AT1G11280 339 / 9e-106 S-locus lectin protein kinase family protein (.1.2.3.4) AT4G21390 333 / 4e-103 B120 S-locus lectin protein kinase family protein (.1) AT1G61380 331 / 5e-103 SD1-29 S-domain-1 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007604 [exp] 906 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 813 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013910 [exp] 750 / 0 AT1G11340 628 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 662 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 660 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025512 [exp] 650 / 0 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10030766 [exp] 650 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 646 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10013246 [exp] 645 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036400 [exp] 595 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 592 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 584 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 580 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 578 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 575 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 489 / 8e-163 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 480 / 8e-160 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 477 / 2e-158 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 450 / 8e-148 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10005136 pacid=23141936 polypeptide=Lus10005136 locus=Lus10005136.g ID=Lus10005136.BGIv1.0 annot-version=v1.0 ATGGACGTTGCAAAGAAGATTGTTATGTTTGCTACTATGCTACTCCTCTCGCACCAAACCATAGCTGCAAACAAATCCATCAAAGACGGGAGCTTGGTGA TCTCCAAAGGTGGTAAGTTTGCTATGGGGTTTTTCAGTCCTGGAAGTTCTCATTATAGGTATTTTGGCATCTGGTACCATGACATACCTAAGAGGACTGT AGGTTGGGTAGCAAATAGGGACAATCCCATTACTGGAAACTCAGGGGTGATTCTATGGAATCAAGAGTTTTGCAATCTTAATCTGCATAGTAATGGTAGT AGCAAGGTTATTCCGGTTTGGTCGGCTAATGTTTCGATTTGGTTGAACGGTTCGTGCGAGGCTCAGCTACTGGATTCTGTTAATTTGGTATTGATGATGA TGGGAGGTAGTAGAAGTAAGAGGAGGAATATTGTGTGGCAAAGCTTTGACAGTCCTACTGACACCCTACTTCCCGGCATGAAAGTTGGGATGGATCAAAG AACCGGGTCGTCCGGGTCGTTTCGGTTCTTGACATCTTGGAGATCAGCGGATGATCCTGGGACAAGTGATTTCTTGTATAAGCTGAACCCAAATGGGTCG CCGCAGTTCTTTATGTACCAGGGTATAGTTCCTTATTGGCGGAGCGTTCCATGGCCATGGCAGTGGCAGACTTATCTTAGTTTTCTGAAGAACTCTTATG ATAACAACGAGGATGGAATATACTATTCAAATGCCGTCATTAATTCTACTGTTCTCTTAAAGATGATGATTGATCCTTTGGGTTTGCTTGAGTCAATGAT TTGGGATGGAGATGAGGGCCAGTGGAAAGTGTTTTACTCATCACCAAAGCAGAAGTGTGATTATTATGGCGCTTGTGGCCCTTATGCCAAATGTTATTCT AGTATTGTTTTCCCTTATGAATGTGATTGTTTACCTGGTTATGAACCGAGATACCCTCGAAAGTGGGATCTAAGAGACAGGTCTGGTTGGTGCGTACGAA AGCGATCAGAATCATCTTCCATGTGCGGGAGCGGAGAAGGGTTTGTGAGAGTCGAGAAGGTGAAGATTCCCGATACCTCGACAGCAATATGGACGGACAT GGGCATGGATAAAGAGAAATGTGAAGATGAATGCAGGAAGAGCTGTGCATGCTCTGCATATGCTACCATTGGCATTGATAGGAAAGGAACTTCTTGTTGG AGATGGCAGGGAGAGCTGTTGGATACAGTACACTTACCGGACAATGCTTTCGATCTGTACGTTCGTGTTGATGCCCTTGAACTAGCTGATTACCTGAAGG ATTCCAATGGCTTTGTTGAGCTTAGGCTGAGGTTGAGCATTATTGTACCATCTATCGTCTCAGTATGGCTTGTTATCATCTTGCTTGCCTATATGTGGCT CAGGAAGTGGAAAAATAGGCGGGTGAAGAACAGACGGATCAGAAATTTCTTTCATCCAAATGACGCTTCAAATTACTTGGAAGATTCTTTGGCCCCAAGA GAAATTAATCGAAGTACTATCTACCCAGAACTACCCTTTTTCAGCCTTAGCACCATACATGAAGCCACTGACAGTTTTTCTCCTGAAAACAAAATTGGAC AGGGGGGTTTTGGTTCAGTGTACAAGGGTAAACTGTCGAGCAGACACGAGGTTGCTATGAAACGACTGTCCCGAAGTTCGAGGGAAGGGTTAGAACAATT TAAGAACGAGGTACTGTTGATAGCGAAGCTCCAGCACCGGAAACTTGTGAAGCTTCATGGTTGCTGCATCGAGGAAGACGAGCAGATGTTGGTCTACGAA TACTTGCCCTACAACAGTTTGGATTCCCTCCTTTTCGTTGATGATGAGAAGGAAAGATCTGTCCTGGATTGGAGGAAACGGTTCAATATCATCGTGGGTA TTGCTCGTGGGATATTGTATCTGTTGGGGCGCAGCGGACGAGAATAG
AA sequence Show only first row Show all	>Lus10005136 pacid=23141936 polypeptide=Lus10005136 locus=Lus10005136.g ID=Lus10005136.BGIv1.0 annot-version=v1.0 MDVAKKIVMFATMLLLSHQTIAANKSIKDGSLVISKGGKFAMGFFSPGSSHYRYFGIWYHDIPKRTVGWVANRDNPITGNSGVILWNQEFCNLNLHSNGS SKVIPVWSANVSIWLNGSCEAQLLDSVNLVLMMMGGSRSKRRNIVWQSFDSPTDTLLPGMKVGMDQRTGSSGSFRFLTSWRSADDPGTSDFLYKLNPNGS PQFFMYQGIVPYWRSVPWPWQWQTYLSFLKNSYDNNEDGIYYSNAVINSTVLLKMMIDPLGLLESMIWDGDEGQWKVFYSSPKQKCDYYGACGPYAKCYS SIVFPYECDCLPGYEPRYPRKWDLRDRSGWCVRKRSESSSMCGSGEGFVRVEKVKIPDTSTAIWTDMGMDKEKCEDECRKSCACSAYATIGIDRKGTSCW RWQGELLDTVHLPDNAFDLYVRVDALELADYLKDSNGFVELRLRLSIIVPSIVSVWLVIILLAYMWLRKWKNRRVKNRRIRNFFHPNDASNYLEDSLAPR EINRSTIYPELPFFSLSTIHEATDSFSPENKIGQGGFGSVYKGKLSSRHEVAMKRLSRSSREGLEQFKNEVLLIAKLQHRKLVKLHGCCIEEDEQMLVYE YLPYNSLDSLLFVDDEKERSVLDWRKRFNIIVGIARGILYLLGRSGRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10005136 [exp]	0	1
					Lus10007176 [exp]	1.0	0.8457
					Lus10039750 [exp]	4.9	0.8436
					Lus10002152 [exp]	6.0	0.8413
					Lus10010117 [exp]	6.9	0.8413
					Lus10042500 [exp]	6.9	0.7085
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	7.7	0.8413
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10014754 [exp]	8.1	0.6604
					Lus10005187 [exp]	8.5	0.8413
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	9.2	0.8413
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	9.8	0.8413

Compare expression of checked genes

Lus10005136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.