Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 223 / 8e-68 S-locus lectin protein kinase family protein (.1) AT4G23180 214 / 8e-66 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT1G11410 210 / 3e-63 S-locus lectin protein kinase family protein (.1) AT4G23150 205 / 3e-62 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G21380 205 / 2e-61 ARK3 receptor kinase 3 (.1) AT4G00970 202 / 4e-61 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT1G65790 204 / 5e-61 ARK1 receptor kinase 1 (.1) AT1G65800 204 / 8e-61 ARK2 receptor kinase 2 (.1) AT4G21390 203 / 1e-60 B120 S-locus lectin protein kinase family protein (.1) AT4G23140 201 / 2e-60 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025242 [exp] 349 / 2e-124 AT1G11340 162 / 1e-46 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 332 / 3e-109 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013910 [exp] 314 / 1e-102 AT1G11340 628 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 302 / 1e-97 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041679 [exp] 229 / 1e-72 AT1G11340 417 / 1e-137 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 233 / 1e-71 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 233 / 1e-71 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 231 / 9e-71 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 230 / 1e-70 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035850 [exp] 241 / 1e-78 AT4G23270 397 / 6e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) Potri.011G036100 [exp] 244 / 3e-76 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 243 / 2e-75 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 242 / 4e-75 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 241 / 1e-74 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036466 [exp] 226 / 4e-73 AT1G11340 411 / 1e-136 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 226 / 4e-69 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 220 / 5e-67 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G024632 [exp] 209 / 1e-66 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G037100 [exp] 218 / 5e-66 AT4G21380 982 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005137 pacid=23141909 polypeptide=Lus10005137 locus=Lus10005137.g ID=Lus10005137.BGIv1.0 annot-version=v1.0 ATGCGGAGAGTACATCTACGGCAGCAGCGACAGCTACGAGCACTTCTTCACTATAACAAGGACTCGAGGTTCAGAATAATTCATAGAGATCTAAAACCCA GCAACATTCTCCTAGATGCTGAGCTGAACCCCAAAATCTCCGATTTTGGGATGGCTAGAATTCTGGACAGCAACCGGATTGATGAGAAGGCCAGCAGAGT CTGTGGGACCTACGGTTATATGTCACCAGAGTATGTAATCTTCGGAAGGTATTCAGCGAAACTCGATGTCTACAGCTTTGGGGTGATATTGCTCGAAACA ATCACCGGGAAGAAGATCACCGGGTTCTTCCATGAAGATCCTTCCCTGAGCCTGATCTGCCATGTGTGGGAGCTATGGCGGGCAGGTAGAGCCACCGAGG CAATCGATCCGTCAATATCAATCAAACACTCCTCCCCGAACGAGGTGCTGCGGTGCATCCAAATCGGACTATTGTGCGTGGAGGAAAATGCAGCGGACCG ACCCGATATGTTGTCAGTGGTTCTCATGTTGAACAGCGAAACCACGCCTGTCCCATCTCCCCAAAAACCTGCGTTTGTTGCTTCTGTGAAACCCAAGCTA CCATTGACGAAAGAACAGACGACCTATTCCCTAAACGAGATGTCGTTCTCAGGGATCCTTAGTCGTTGA
AA sequence Show only first row Show all	>Lus10005137 pacid=23141909 polypeptide=Lus10005137 locus=Lus10005137.g ID=Lus10005137.BGIv1.0 annot-version=v1.0 MRRVHLRQQRQLRALLHYNKDSRFRIIHRDLKPSNILLDAELNPKISDFGMARILDSNRIDEKASRVCGTYGYMSPEYVIFGRYSAKLDVYSFGVILLET ITGKKITGFFHEDPSLSLICHVWELWRAGRATEAIDPSISIKHSSPNEVLRCIQIGLLCVEENAADRPDMLSVVLMLNSETTPVPSPQKPAFVASVKPKL PLTKEQTTYSLNEMSFSGILSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10005137 [exp]	0	1

Compare expression of checked genes

Lus10005137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.