Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46850 560 / 0 Protein kinase superfamily protein (.1) AT2G23450 170 / 1e-44 Protein kinase superfamily protein (.1.2) AT5G66790 151 / 1e-38 Protein kinase superfamily protein (.1) AT5G02070 132 / 4e-32 Protein kinase family protein (.1) AT1G79680 130 / 2e-31 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G16260 129 / 4e-31 Wall-associated kinase family protein (.1.2) AT1G19390 126 / 4e-30 Wall-associated kinase family protein (.1) AT1G66880 127 / 5e-30 Protein kinase superfamily protein (.1) AT1G69730 125 / 1e-29 Wall-associated kinase family protein (.1) AT4G31100 122 / 7e-29 wall-associated kinase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030181 [exp] 678 / 0 AT2G46850 429 / 2e-145 Protein kinase superfamily protein (.1) Lus10030180 [exp] 213 / 3e-66 AT2G46850 134 / 6e-38 Protein kinase superfamily protein (.1) Lus10032741 [exp] 176 / 1e-46 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 160 / 2e-41 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 137 / 6e-34 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014387 [exp] 124 / 2e-29 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10008105 [exp] 114 / 3e-26 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10003063 [exp] 110 / 7e-25 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10004504 [exp] 109 / 1e-24 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G181100 [exp] 698 / 0 AT2G46850 670 / 0.0 Protein kinase superfamily protein (.1) Potri.005G130900 [exp] 181 / 1e-48 AT2G23450 773 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G034500 [exp] 176 / 1e-46 AT2G23450 731 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G038600 [exp] 167 / 8e-44 AT2G23450 620 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G130600 [exp] 160 / 3e-41 AT2G23450 605 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G148432 [exp] 140 / 1e-34 AT1G16260 519 / 2e-175 Wall-associated kinase family protein (.1.2) Potri.003G185850 [exp] 135 / 3e-33 AT1G69730 535 / 1e-180 Wall-associated kinase family protein (.1) Potri.018G148300 [exp] 133 / 3e-32 AT1G79680 511 / 7e-172 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.003G185732 [exp] 130 / 4e-32 AT1G17910 446 / 8e-150 Wall-associated kinase family protein (.1) Potri.004G192300 [exp] 128 / 5e-32 AT1G16130 422 / 4e-142 wall associated kinase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10005138 pacid=23141907 polypeptide=Lus10005138 locus=Lus10005138.g ID=Lus10005138.BGIv1.0 annot-version=v1.0 ATGTTTCCGCTATGGTTACTCTGCATCACCTGCTTCTTCACTCTCTTCTTCACACTGTCCAATTCACTCTTCTGCAACGAGACATGCGGAAAACTCCAAC TCCCTTTCCCATTCCACATCAGCTCCTCCTGCAGCAGCCCTACTTCATCCCCTTCCCCATTCCACCTCACCTGTACAAACTCTACATCCCTTTCTCTAAC AATCGACTCCAACACCTACAGAGTCCTCCGCTTCTTCTCCGATGGGCTCCTCGTCGATTTCCCTTCCCCCTCCTCCTCCTCTTCCGCCGCCACCTGCCGC CAGTACAACGATCTCAACGCCTTCTCCTTCAGCGGCAACGCCCACTTCGGGATCTCGACGGAGAACGTAATCGGGCTGTACGACTGTGAGGATTCTTCGC TCTGCAAAGCAGAGTGCGAGGCCGTCGATCTTCCTGGCTGCGACGGCAACATTGACGGTGGTGGTTCGCCGGCTTGCTGCTACCCGCTGTCGGACCACAG CTCGTGGGATTTGGGAGATGGATTCGGTGTTTTTGGTAAGTTTGGGTGCAGGGGATTCTCTTGCTGGGTTGTGCCGAGAGGGGAGAATTCCGGGAAGCGT GGGGTTAAGCTGGAATGGGCTCTTTGGGGCAATTCGTCGAACAGGTTGTGTGCGGATGATGCTGATTTTGTTAATGCTACTACTGTGGCAAGTGGGGTTA GGTGTAAGTGTCGAAATGGGTTCGTTGGTGATGGTTATTTCAATGGCAGTGGTTGCTTGAAATCTTGCGTTAAGGATGGCCGTGAAGCTCACGGCCGCGA CTGCTTTCCCAAGCGAAGAAGCAGCAAGATGGTCTCCGTTATAGCCGGAGTTTTGGGTCCGATATTCGTGATAGCATCATTAACGGCGTTACTCTGCCTG CTGAAGCGTCCGGCTAATGGAACGGCGTCGTACGACGCGAACAGGAAAGACAAGTTCCACGCCACGGTATCCTTCAGGAACCCATGGACGGCGCGTTCCT TCACTTACAGGGAGTTGGAGGAAGCCACCAGATGGTTCGAAGACGGCCAGAAACTCACCGGAAGCGGCGGTGGAAGCGGCGGCGGTGGGGAGATATTTGC GGGAGTTCTCGCTGATGGATCTAAGGTGGCCGTACACAAAGTTGAGTGCCGAGACCAGAGAGATCTCAACCAGGTGCTCTCGCGAATCGATGTCCTCTCC TCCGTCTTCCACCGCAACATGGCTCGAATCATCGGCTGCTGCATCGACTATGGATACACGCCACTCGTCGTCTACGAGTTCCCAGGGAACGGAACCCTGG ATCAGTATCTGCGGGACGGCGGCGACGAATTGGCGGATCTAGACTGGTACAGGAGGCTGAGCATCGCGGTGGAGACTGCGAGCGTGCTCGCTTTCCTACA GCAGGAAGTTATCCCGCCGATCTTCCACCACAATCTCAGATCCGATTGTCTATTCCTCGACGAGTACCATTCCGTCCGCGTCGGCGGGTTCAGGCTCCAC ATCGGATCCGAGATCGGCGGATCCGGATCCGGAGGATTCGTTCCGAAGAGCGATGTGTATCAGTTCGGCGCGCTGCTGATGGAGATGATCGGCGGATCGC AGGTGCCGGCGGCGGTGGCGATTCAGAAGATGAGGAAGGGGAAGGTGGAGGAGATCGTGGATCCGAAGCTGTACTACCACGAGCAGCCGGGGTTCCGGAG GGAGCAGATGGATGCGGTGGCGGATCTGGCGACGAGGTGTTTGCTGTTCGGCGGAGGAGGAGGGGAAGTGGGGGCGGGGAAGATAGGGATGGTGGAGGTG GCGAAGGAGCTTGTGCATATAACGAAGGAGAGCGTGGGCGGCGGAAGTAGTAGGAGAGGTCCGGCCTTGGAAGAGACGTTCTCCAATTCCAGCTTGCTTC AAATGATTTCCATGTCTCCTGATTCTATACATGTTCCATAA
AA sequence Show only first row Show all	>Lus10005138 pacid=23141907 polypeptide=Lus10005138 locus=Lus10005138.g ID=Lus10005138.BGIv1.0 annot-version=v1.0 MFPLWLLCITCFFTLFFTLSNSLFCNETCGKLQLPFPFHISSSCSSPTSSPSPFHLTCTNSTSLSLTIDSNTYRVLRFFSDGLLVDFPSPSSSSSAATCR QYNDLNAFSFSGNAHFGISTENVIGLYDCEDSSLCKAECEAVDLPGCDGNIDGGGSPACCYPLSDHSSWDLGDGFGVFGKFGCRGFSCWVVPRGENSGKR GVKLEWALWGNSSNRLCADDADFVNATTVASGVRCKCRNGFVGDGYFNGSGCLKSCVKDGREAHGRDCFPKRRSSKMVSVIAGVLGPIFVIASLTALLCL LKRPANGTASYDANRKDKFHATVSFRNPWTARSFTYRELEEATRWFEDGQKLTGSGGGSGGGGEIFAGVLADGSKVAVHKVECRDQRDLNQVLSRIDVLS SVFHRNMARIIGCCIDYGYTPLVVYEFPGNGTLDQYLRDGGDELADLDWYRRLSIAVETASVLAFLQQEVIPPIFHHNLRSDCLFLDEYHSVRVGGFRLH IGSEIGGSGSGGFVPKSDVYQFGALLMEMIGGSQVPAAVAIQKMRKGKVEEIVDPKLYYHEQPGFRREQMDAVADLATRCLLFGGGGGEVGAGKIGMVEV AKELVHITKESVGGGSSRRGPALEETFSNSSLLQMISMSPDSIHVP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46850			Protein kinase superfamily pro...		Lus10005138 [exp]	0	1
AT1G51160			SNARE-like superfamily protein...		Lus10039298 [exp]	2.4	0.9026
AT2G46850			Protein kinase superfamily pro...		Lus10030181 [exp]	4.6	0.8925
AT5G16890			Exostosin family protein (.1)		Lus10039145 [exp]	6.6	0.8989
AT1G76370			Protein kinase superfamily pro...		Lus10007041 [exp]	7.1	0.9146
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	16.1	0.9140
AT3G21710			unknown protein		Lus10027176 [exp]	18.3	0.9027
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	22.0	0.9138
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Lus10002121 [exp]	22.2	0.8871
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	25.5	0.9129
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10002401 [exp]	25.9	0.8795

Compare expression of checked genes

Lus10005138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.