Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01050 392 / 7e-141 ATPPA1 pyrophosphorylase 1 (.1) AT2G46860 384 / 1e-137 ATPPA3 pyrophosphorylase 3 (.1) AT4G01480 366 / 1e-130 ATPPA5 pyrophosphorylase 5 (.1) AT3G53620 349 / 7e-124 ATPPA4 pyrophosphorylase 4 (.1) AT2G18230 319 / 5e-112 ATPPA2 pyrophosphorylase 2 (.1) AT5G09650 77 / 1e-16 ATPPA6 pyrophosphorylase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030179 [exp] 437 / 6e-159 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10024422 [exp] 352 / 4e-125 AT3G53620 385 / 3e-138 pyrophosphorylase 4 (.1) Lus10025311 [exp] 354 / 7e-124 AT3G53620 387 / 1e-136 pyrophosphorylase 4 (.1) Lus10028320 [exp] 347 / 6e-123 AT2G46860 360 / 4e-128 pyrophosphorylase 3 (.1) Lus10041767 [exp] 345 / 5e-122 AT2G46860 359 / 5e-128 pyrophosphorylase 3 (.1) Lus10014292 [exp] 343 / 2e-121 AT1G01050 356 / 1e-126 pyrophosphorylase 1 (.1) Lus10025999 [exp] 342 / 3e-121 AT1G01050 357 / 5e-127 pyrophosphorylase 1 (.1) Lus10037239 [exp] 77 / 1e-16 AT5G09650 446 / 1e-159 pyrophosphorylase 6 (.1) Lus10035653 [exp] 77 / 2e-16 AT5G09650 446 / 2e-159 pyrophosphorylase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G107100 [exp] 388 / 2e-139 AT1G01050 404 / 1e-145 pyrophosphorylase 1 (.1) Potri.002G181300 [exp] 388 / 3e-139 AT1G01050 399 / 7e-144 pyrophosphorylase 1 (.1) Potri.006G082500 [exp] 353 / 1e-125 AT3G53620 392 / 8e-141 pyrophosphorylase 4 (.1) Potri.007G022700 [exp] 340 / 5e-120 AT1G01050 353 / 2e-125 pyrophosphorylase 1 (.1) Potri.009G081200 [exp] 77 / 9e-17 AT5G09650 450 / 4e-161 pyrophosphorylase 6 (.1) Potri.001G286900 [exp] 74 / 1e-15 AT5G09650 451 / 2e-161 pyrophosphorylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00719 [flax] [poplar] Pyrophosphatase Inorganic pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10005139 pacid=23141913 polypeptide=Lus10005139 locus=Lus10005139.g ID=Lus10005139.BGIv1.0 annot-version=v1.0 ATGAGTTCCGAAGATAAGAATGGAGGCGAAGGTGAGAGGAAATCTCCTAGATTGAACGAGCGGATCCTTTCGTCCTTGTCCAGGAGAACCGTCGCTGCTC ACCCTTGGCATGATCTCGAAATCGGCCCTGAAGCGCCAAAGGTGTTCAATGTGGTTGTTGAGATCACCAAGGGAAGCAAGGTTAAATATGAGCTGGACAA GAAAACAGGGATGATTAAGGTGGATCGAATTCTGTACTCGTCTGTGGTGTATCCTCATAACTACGGATTCATCCCTCGAACCTTGTGCGAAGACAATGAT CCCATGGATGTTCTGGTCCTGATGCAGGAGCCTGTTATTCCTGGCTGCTTTTTGAGAGCTAGGGCCATTGGCATCATGCCCATGATTGATCAGGGAGAGA AAGATGATAAAATCATTGCAGTTTGTGTGGATGACCCTGAGTACAAGTACTACACCGACATCAAGCAGTTGCCTCCTCATCGCCTTTCTGAGATCCGTCG CTTCTTCGAAGATTATAAGAAGAATGAGAACAAGGAAGTTGCAGTGAATGACTTCTTGCCTTCGGACACAGTTAATGAAGCCATACAGTTCTCCATGGAT CTTTATGCAGAGTATATTCTGCATACTCTTAAGCGATGA
AA sequence Show only first row Show all	>Lus10005139 pacid=23141913 polypeptide=Lus10005139 locus=Lus10005139.g ID=Lus10005139.BGIv1.0 annot-version=v1.0 MSSEDKNGGEGERKSPRLNERILSSLSRRTVAAHPWHDLEIGPEAPKVFNVVVEITKGSKVKYELDKKTGMIKVDRILYSSVVYPHNYGFIPRTLCEDND PMDVLVLMQEPVIPGCFLRARAIGIMPMIDQGEKDDKIIAVCVDDPEYKYYTDIKQLPPHRLSEIRRFFEDYKKNENKEVAVNDFLPSDTVNEAIQFSMD LYAEYILHTLKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Lus10005139 [exp]	0	1
AT5G20480		EFR	EF-TU receptor (.1)		Lus10024681 [exp]	4.2	0.7985
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10034514 [exp]	5.9	0.7414
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10024260 [exp]	10.3	0.8108
AT5G39160			RmlC-like cupins superfamily p...		Lus10034254 [exp]	14.6	0.8108
AT3G08990			Yippee family putative zinc-bi...		Lus10004823 [exp]	15.5	0.8050
AT4G39830			Cupredoxin superfamily protein...		Lus10009603 [exp]	17.0	0.8015
AT2G33980		ATNUDT22	nudix hydrolase homolog 22 (.1...		Lus10041965 [exp]	17.3	0.7466
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10002831 [exp]	17.8	0.8099
					Lus10009892 [exp]	26.5	0.7889
					Lus10008409 [exp]	27.2	0.7970

Compare expression of checked genes

Lus10005139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.