Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11650 117 / 6e-33 ATOSM34 osmotin 34 (.1) AT1G77700 84 / 2e-19 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 79 / 1e-17 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G36010 78 / 3e-17 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75040 75 / 1e-16 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G19320 74 / 2e-16 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75050 73 / 8e-16 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75800 73 / 2e-15 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 72 / 2e-15 ATLP-3 thaumatin-like protein 3 (.1) AT4G24180 72 / 2e-15 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017170 [exp] 166 / 5e-52 AT4G11650 251 / 2e-84 osmotin 34 (.1) Lus10007034 [exp] 146 / 7e-44 AT4G11650 293 / 5e-101 osmotin 34 (.1) Lus10006302 [exp] 143 / 5e-43 AT4G11650 294 / 3e-101 osmotin 34 (.1) Lus10006690 [exp] 142 / 2e-42 AT4G11650 292 / 1e-100 osmotin 34 (.1) Lus10024511 [exp] 124 / 5e-35 AT4G11650 315 / 5e-109 osmotin 34 (.1) Lus10037483 [exp] 83 / 5e-19 AT1G75030 242 / 3e-79 thaumatin-like protein 3 (.1) Lus10015705 [exp] 80 / 2e-18 AT1G75030 256 / 6e-86 thaumatin-like protein 3 (.1) Lus10025629 [exp] 81 / 4e-18 AT1G77700 377 / 4e-130 Pathogenesis-related thaumatin superfamily protein (.1) Lus10023897 [exp] 79 / 5e-18 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G107800 [exp] 141 / 3e-42 AT4G11650 291 / 1e-100 osmotin 34 (.1) Potri.001G107950 [exp] 140 / 5e-42 AT4G11650 287 / 6e-99 osmotin 34 (.1) Potri.001G107600 [exp] 129 / 2e-37 AT4G11650 356 / 1e-125 osmotin 34 (.1) Potri.001G102400 [exp] 125 / 9e-36 AT4G11650 360 / 2e-127 osmotin 34 (.1) Potri.018G096063 [exp] 117 / 5e-33 AT4G11650 314 / 2e-109 osmotin 34 (.1) Potri.002G087100 [exp] 81 / 2e-18 AT1G77700 384 / 2e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.003G020100 [exp] 80 / 5e-18 AT1G77700 274 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.011G003900 [exp] 81 / 8e-18 AT5G38280 413 / 1e-135 PR5-like receptor kinase (.1) Potri.005G173900 [exp] 79 / 9e-18 AT1G77700 316 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112600 [exp] 76 / 2e-16 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10005140 pacid=23141917 polypeptide=Lus10005140 locus=Lus10005140.g ID=Lus10005140.BGIv1.0 annot-version=v1.0 ATGTCCCTCAGGGACCACCGGAGGCTGAATATGGGCCCGCAACGGCTGCCAGTTCAATGGTGCACAGGGCGGTGCCATACTGGCGACTGCGGAGGCCTCC TTGAGTGTAAAGACTACGGTGCTGCTCCCAACACCTTGGCCGAGTTCGCGTTGAACCAGTTCAGTGGCTTGGATTACATCGATATCTCGCTGGTCGACGG GTTCAACGTGTTGAGGTTCAGCGGCTTGGATTACATCGATATCTCGCTGGTCGACGGGTTCAACGTGCCAGTAATGTTGAGCTCGGCATCCCCGGCCAGC TGCGGGACGGTGATGAGGTGCAGGGGTGATATCATAAGACAGGAGCGTCCAAATGCGCTCAGAGTTGACGGAGGTTGCAATGGGGCTTGTCCGCAGTTGA AGAGAGACGAGTACTGTTGCCCCAACAGATACAAAGGCGTACATTGCGGGCCTACAGATTTCTCAAGGTATTTCAAGGATGGGTGCTATGATGCTTATAG TTGCCCCGCAGTTGACCCAACCAGCGTCATCTTTTTGTTGGACCGTTATTGA
AA sequence Show only first row Show all	>Lus10005140 pacid=23141917 polypeptide=Lus10005140 locus=Lus10005140.g ID=Lus10005140.BGIv1.0 annot-version=v1.0 MSLRDHRRLNMGPQRLPVQWCTGRCHTGDCGGLLECKDYGAAPNTLAEFALNQFSGLDYIDISLVDGFNVLRFSGLDYIDISLVDGFNVPVMLSSASPAS CGTVMRCRGDIIRQERPNALRVDGGCNGACPQLKRDEYCCPNRYKGVHCGPTDFSRYFKDGCYDAYSCPAVDPTSVIFLLDRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10005140 [exp]	0	1
					Lus10035046 [exp]	4.8	0.8568
					Lus10011725 [exp]	10.3	0.8092
AT1G68470			Exostosin family protein (.1)		Lus10005566 [exp]	18.1	0.7955
AT1G33930			P-loop containing nucleoside t...		Lus10003507 [exp]	20.2	0.6939
AT4G34760			SAUR-like auxin-responsive pro...		Lus10012189 [exp]	21.4	0.7869
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10036604 [exp]	23.9	0.7904
					Lus10012497 [exp]	24.7	0.7277
AT5G42905			Polynucleotidyl transferase, r...		Lus10034950 [exp]	37.1	0.7547
AT5G36930			Disease resistance protein (TI...		Lus10042165 [exp]	45.2	0.7890
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10035822 [exp]	51.9	0.7764

Compare expression of checked genes

Lus10005140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.