Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01040 551 / 0 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT3G03300 195 / 2e-55 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT3G43920 192 / 3e-54 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT3G20420 175 / 3e-51 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) AT4G15417 151 / 2e-43 ATRTL1 RNAse II-like 1 (.1) AT5G20320 147 / 1e-38 DCL4, ATDCL4 dicer-like 4 (.1.2) AT5G45150 122 / 3e-30 RTL3 RNAse THREE-like protein 3 (.1) AT1G80650 42 / 0.0002 RTL1 RNAse THREE-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030177 [exp] 667 / 0 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10036447 [exp] 187 / 1e-52 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10016367 [exp] 180 / 3e-50 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10019587 [exp] 171 / 3e-48 AT5G20320 556 / 0.0 dicer-like 4 (.1.2) Lus10000182 [exp] 156 / 4e-45 AT4G15417 230 / 5e-75 RNAse II-like 1 (.1) Lus10019757 [exp] 138 / 1e-35 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3) Lus10015141 [exp] 129 / 2e-35 AT4G15417 197 / 2e-63 RNAse II-like 1 (.1) Lus10005142 [exp] 51 / 1e-06 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10040013 [exp] 49 / 4e-06 AT5G20320 318 / 6e-98 dicer-like 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G181400 [exp] 594 / 0 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.011G086700 [exp] 191 / 8e-58 AT3G20420 356 / 9e-122 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) Potri.002G226700 [exp] 189 / 9e-58 AT4G15417 244 / 1e-80 RNAse II-like 1 (.1) Potri.010G181400 [exp] 187 / 2e-52 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.008G075900 [exp] 185 / 7e-52 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.018G047500 [exp] 184 / 2e-51 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.006G188800 [exp] 181 / 1e-50 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [flax] [poplar] RNase_III PF00636 [flax] [poplar] Ribonuclease_3 Ribonuclease III domain CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10005141 pacid=23141929 polypeptide=Lus10005141 locus=Lus10005141.g ID=Lus10005141.BGIv1.0 annot-version=v1.0 ATGCCGGATAGCGTTATGAGAAGTATTGATTTCGAGACTATTGAAGGTGTCCTGAATCACAAATACAGCAAGAAGTCCCTTTTGATAGAGGCCATAACTC ATGCTTCGAAACCGTCTCCCGGAGTCTCCTGCTATCAACGGTTGGAGTTTGTTGGCGATGCGGTCTTGGATCATCTCATTACGAGGCACCTCTTCTTCTC ATATACAGATTTACCCCCCGGTAGACTAACGGACTTGCGTGCTGCTGCTGTAAACAATGAAAACTTCGCCCGTGTTGCTGTAAAACGTAAGCTCCATGTC CACCTCCGCCATGGATCGAGTGCACTCGAAAAGCAGATAAGAGAATTCGTAAAGGAGGTTCAGCAAGAAGCTTCGAAGCTGGAGTTCAATTCTTTCGGCT TGGGAGACTGCAAAGCTCCAAAAGTTCTTGGTTACATTGTCGAATCCATTGCTGGCTCTATTTTCCTTGACAGCGGGCTGGACACCGGAGTCGTCTGGAA GGTGTTCCAGCCTTTTTTGGACCCAATGGTGACTCCAGAGACACTCCAAATGCATCCAGTAAGAGAGCTACAAGAGCGATGCCAGCAACAGGCTGAAGGA CTGGAATACAAGTCCAGCCGAACGGGAAATGTGGCGACTGTCGAAGTCTTCATCGACGGAGTCCAGGTGGGAGTCGCTCAGAACCCGCAAAAGAAGATGG CACAGAAACGAGCTGCTAGGAATGCACTTGTTGTCCTCAAGGAGAAAGAAACCGCGGCAGCAGCTATCGAAGCAGCCAATGATGAGAATGGGAAGAAGAA GAAGAACGGAAACCAGACGTTTACGAGACAGACGTTGAACGACATCTGCTTGCGCCGAAACTGGCCGATGCCTTTCTACAGGTGCGTGAGCGAAGGTGGC CCGGCTCATGCGAAGAGGTTCACGTTTGCGGTGCGAGTGAACACGAATGACTGGGGCATGACCGATGAATGCATTGGGGAGCCGATGCCGAGTGTGAAGA AGGCCAAGGACTCAGCTGCAATTCTTCTCCTTGAACTCTTGAACAAACGGGACTCGTCCTGA
AA sequence Show only first row Show all	>Lus10005141 pacid=23141929 polypeptide=Lus10005141 locus=Lus10005141.g ID=Lus10005141.BGIv1.0 annot-version=v1.0 MPDSVMRSIDFETIEGVLNHKYSKKSLLIEAITHASKPSPGVSCYQRLEFVGDAVLDHLITRHLFFSYTDLPPGRLTDLRAAAVNNENFARVAVKRKLHV HLRHGSSALEKQIREFVKEVQQEASKLEFNSFGLGDCKAPKVLGYIVESIAGSIFLDSGLDTGVVWKVFQPFLDPMVTPETLQMHPVRELQERCQQQAEG LEYKSSRTGNVATVEVFIDGVQVGVAQNPQKKMAQKRAARNALVVLKEKETAAAAIEAANDENGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVSEGG PAHAKRFTFAVRVNTNDWGMTDECIGEPMPSVKKAKDSAAILLLELLNKRDSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005141 [exp]	0	1
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	1.4	0.8936
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10022359 [exp]	4.2	0.8313
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10000250 [exp]	5.3	0.8469
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10034964 [exp]	8.2	0.7730
					Lus10001257 [exp]	8.4	0.8037
AT1G20500			AMP-dependent synthetase and l...		Lus10020473 [exp]	8.8	0.8012
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Lus10037966 [exp]	12.6	0.7839
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	13.7	0.8234
AT5G59700			Protein kinase superfamily pro...		Lus10020474 [exp]	15.0	0.7770
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042995 [exp]	15.9	0.7605

Compare expression of checked genes

Lus10005141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.