Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01040 1979 / 0 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT5G20320 396 / 4e-114 DCL4, ATDCL4 dicer-like 4 (.1.2) AT3G03300 350 / 7e-100 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT3G43920 238 / 4e-63 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT1G35530 59 / 3e-08 DEAD/DEAH box RNA helicase family protein (.1.2) AT3G20420 53 / 9e-07 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) AT5G11170 48 / 3e-05 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G11200 48 / 4e-05 DEAD/DEAH box RNA helicase family protein (.1.2.3) AT1G31970 48 / 5e-05 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT5G62190 47 / 8e-05 PRH75 DEAD box RNA helicase (PRH75) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030176 [exp] 1183 / 0 AT1G01040 972 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10016367 [exp] 462 / 3e-137 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10019757 [exp] 456 / 3e-135 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3) Lus10030177 [exp] 387 / 3e-118 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10036447 [exp] 323 / 9e-91 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10019588 [exp] 187 / 7e-48 AT5G20320 1152 / 0.0 dicer-like 4 (.1.2) Lus10040013 [exp] 71 / 2e-12 AT5G20320 318 / 6e-98 dicer-like 4 (.1.2) Lus10009444 [exp] 56 / 4e-07 AT1G35530 953 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Lus10005141 [exp] 51 / 5e-06 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G181400 [exp] 2073 / 0 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.018G047500 [exp] 509 / 5e-154 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.008G075900 [exp] 366 / 6e-105 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.010G181400 [exp] 351 / 5e-100 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.006G188800 [exp] 338 / 4e-95 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.013G109600 [exp] 65 / 4e-10 AT1G35530 1234 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.011G086700 [exp] 50 / 6e-06 AT3G20420 356 / 9e-122 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) Potri.002G226700 [exp] 48 / 2e-05 AT4G15417 244 / 1e-80 RNAse II-like 1 (.1) Potri.008G084700 [exp] 46 / 0.0001 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.015G133400 [exp] 46 / 0.0002 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [flax] [poplar] RNase_III PF00636 [flax] [poplar] Ribonuclease_3 Ribonuclease III domain CL0196 [flax] [poplar] DSRM PF03368 [flax] [poplar] Dicer_dimer Dicer dimerisation domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10005142 pacid=23141932 polypeptide=Lus10005142 locus=Lus10005142.g ID=Lus10005142.BGIv1.0 annot-version=v1.0 ATGGAGAATCCTAGGGTTCCAGCGAACGGCGGCGGGTCTTACTGGCTGGACGCTTGTGAGGACATCTCGCTTGATGATCTCGATGCTCCTTCCGTTGCTC AGCCTCCGATCATCATCGAAGGCGGCGGCGGTGGTGTTGGTTCTTCGAATCAGGATGCTGCTGATTTCTTCGGTGGGATTGATCACATCCTGGACAGTAT CAAGAACGGCAGGGGCGGCCTACCTCTGCCTGTAGATGGTAAGCTGGAAGCTATTAAGGTTGAGAATGTTGATAATGAGGACAACAAGGTGGGGGTTGTT AAGGTTGAGAATGTTGATAATGGGAATAAGTTTAGTGGGAGAAATGGTCATGGATTGGTGAGGAAGCGGAACTGGGAGATAGAGAGTTGTGGGAAGAGGG GTAGGCTTACCAGTGGTTGCAGATACGAAAGAGGAGGTAGGCAGTATGATTCTAGGAAGAGGGGGAGAGAATGGAACGATGTGGACAGGAAGGAGAGGGC TCAGGGTCGGGGAAGAGGTTGGTTCGGTGTTAATGGTGTCAAGAGGGATGGTAGGGAAAGGGAATGGCGGGAGAGGGAACAGAGGGGTTATTGGGAGAGG GATAATACCGGATCGAACGGGATAGTTTTTCGGCCTGGTACTTGGGAGTCTGATCATAAGAATGAGGAGAAACTGATTGGTGAGAAGAATGGTGTGGAGT CTGCTGAAAAAGTGGAGACGTCACCTGAAGAGCCTAAGGAGAAAGTTCCCGAGGAACATGCCAGGAAGTATCAGTTAGATGTTCTTGAGCAAGCGAAGAA AAGAAACAGAATAGCTTTCCTTGAAACCGGGGCTGGGAAGACCCTTATTGCTGTGCTTCTCATGAAAAGCATCTCCAGTGACCTGGAGAAGAGTAACAAG AAAATGCTTGCTGTGTTTTTGGTTCCGAAAGTACCACTTGTTTATCAGCAAGCAGAGGTTATTCGTGAGCGTACTGGCTTTCAAGTTGGCCATTTCTGTG GCGAGATGGGTCATGACTTCTGGGACACTAGAAGATGGCAGCGTGAGTTTGAAACCAAGCAGGTTTTAGTAATGACTGCCCAGATTCTGCTGAACATCCT GAGGCATAGCATAATTAAAATGGAGTCGATAAATCTTCTTATCCTTGATGAATGTCATCATGCTGTGAAGAAACATCCATATTCTCTCGTGATGTCAGAA TTCTATCATACAACTGAGAAGGAGAAAAGGCCATCAGTGTTTGGAATGACTGCTTCTCCTGTTAACTTAAAGGGTGTTTCAAGCCAAGTGGACTGTGCAA TAAAGATCAGCAATCTTGAGAGTAAACTTGACTCTGTTGTTTGTACAGTTGAAGATCGAAAAGAGCTGGAAAAGCATGTCCCAATGCCTTCAGAAATTGT TGTGGAATATGACAAAGCTGCTAGCTTATGGTCACTTCATGAGCAATTAAAGCAAATGGAAGTTGCGGTTGAAGAAGCTGCACAATCCAGCTCTAGAAAA AGCAAATGGCAATTTATGGGAGCAAGGGATGCTGGTGCTAAAGATGAGCTGCGCCAGGTTTATGGTGTCTCTGAAAGAACTGAGAGTGATGGCGCTGCCA ACTTAATTCAAAAGTTGAGAGCTATTAATTATACTCTTCGCGAACTCGGTCAGTGGTGTGCTTACAAGGTTGCTCTATCCTTTTTGGCTGCTTTGCAAAA TGATGAAAGGTCAACCTATCAGCTTGATGTCCAGCTTCAAGAATCCTATCTAGAAAAGGTTGTGTCCCTTCTACAATGCCAAGTGACAGAAGGAGCTGCT ACCGAGAAAGACACAAAAGTTGCAGATGAAGATAATGGCATTGCTCAAGCTGAAACTGATCCTGAAGAGATTGAGGAGGGAGAGCTCCCAGATGATCACG TTGTGTCTTGTGGAGAGCACTTTGATGTGATAATTGGAGCTGCAGTTGCTGATGGGAAAGTTACCCCCAAAGTCCAGTCATTAATAAAGATACTTCTCAA ATACCAGCACACGGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTGGTTGCTGCTTTAGTTCTTCCTAAGGTCTTTGCAGAGCTTCCCTCTCTCAGT TTCATCAAAAGTGCTAGCTTGATTGGTCATAACAATAGTCAAGAGATGCGAACAAGCCAAATGCAGGACACAATTGCTAGATTTTGGGATGGCCGTGTGA CATTGTTGGTAGCTACTAGTGTTGCTGAGGAAGGACTTGATATTAGACAATGCAATGTTGTCATCCGTTTCGATCTTGCAAAAACTGTTCTGGCGTACAT TCAGTCAAGGGGCCGTGCAAGAAAACCTGGTTCAGATTACATCTTAATGGTTGAAAGGGGAAACCTATCTCATGAAGCATTTTTAAGGAATGCCAGAAAT AGTGAGGAAACTTTACGGAGAGAAGCAATTGAAAGAACTGACCTTAGTCATCTAAAGGATACTTCAAGGGTAATTTCTGTAGATCCAGTACCAGGAACTA TATACCAGGTGGCTTCCACTGGCGCTGTTGTAAGCTTGAATTCTGCTGTCGGGCTTATACATTTCTACTGCTCCAAGCTGCCCAGTGACAGATATTCAAT TCTTCGTCCCGAGTTTATCATGGAGAATCACGAAAAACCAGGAGGTCCCATTGAATATTCGTGCAAGCTCCAACTTCCTTGTAATGCTCCAAGCGAGAAG CTTGAGGGTCCTGCTGTGTGTTTGGCTGGCTGCAAGAAGCTCCATGAGATGGGAGCATTTACTGATATGTTATTGCCAGACAGAGGAAGTAGAGAAGACA AAGAAAAGGAAAATGATGAAAGTGAACCACTTCCTGGAACTGCCAGGCACCGGGAATTCTATCCTGAAGGTGTAGCTGATATTCTTCAGGGTGAATGGAT CTTATCAGGAAAAGATTCCTGTAGCGAGTCCAAGGTGTTTCGGCTTTACATGTATGCTGTTTCGTCTGTTAATAGCGGCACTTCAAAAGATCCTTACATA AGTCAAGTTTCCGAATTTGCAGTGTTTTTTGGCAGTGCGCTGGATGCAGAGGTGTTATCGATGACGGTGGATCTCTTTATCGCTCGAACCATGACAACAA ATGCATCTCTTGTCTTTAAAGGTGCAATTGAAATCAATGAAAGCCAGCTGGCATCCCTAAAAAACTTTCATGTCAGATTGATGAGTATTGTACTGGATGT GGATGTTGAACCTTCCACTACTCCATGGGATCCTGCTAAGGCATATTTGTTTGTCCCTGTGGTTGGCGTTAAGTCTGTAGATCCGATAGTTGAAATTGAT TGGGATCTGGTTAGAGAAATAATAGATTCGGATGCATGGACCAATCCCCTTCAAAGAGCCAGACCAGATGTCTATCTTGGTACGAATGAGAGGACACTGG GGGGTGATAGGAGAGAATATGGATTTGGAAAATTGCGGCATGGCCTTGCTTTTGGACAGAAATCCCATCCAACTTATGGTATCAGGGGAGCTGTTGCTCA GTTTGACATTGTCAGAGCTTCTGGATTGGTTCCGAACCGTGATACATCAGCAACACAAACCACGGAGCTGTCCAAAGGCAAGCTGATGATGGCTGATACT TGCCTTCCTACCGAAGATTTGGTAGGGATGGTAGTAACAGCTGCTCATTCTGGGAAAAGGTTTTTCGTAGATTCTATACGCTATGATATGACAGCGGAGA ATTCATTCCCAAGGAAAGAAGGTTATCTTGGCCCGCTTGAGTACAGCTCATATGCCGAGTATTACAAACAAAAATATGGAGTTGAATTGGTGTACAAATC TCAACGTTTGTTACGAGGTCGTGGTGTTTCATACTGCAAAAATCTCCTCTCCTCTAGGTTTGAACACTCGGAAGGTGCCCAGAGGTTGCCGTCGATAATG AGACGGGTCGAAAGCATGCTCCTTGCTATCCAGCTCAAACATGCAATTAAGTATCCAGTCCCTGCTTCTAAGATCTTGGAAGCTTTGACCGCTGCTTCAT GCCAAGAGACATTCTGTTACGAGAGAGCAGAGCTTTTGGGAGACGCTTACCTGAAATGGGTTGTCAGTCGGTTTCTTTTTCTCAAGTACCCTCAGAAACA TAAAGGCCAACTTACTAGAATGAGGCAGCAAATGGTCAGCAACATGGTTCTCTATCAATTTGCACTGAACAAACGCCTTCAATCTTACATCCAAGCCGAT CGTTTCGCTCCATCTCGGCGGCGGCTCCTGGGATTTTGCCCGTCTTTGATGAAGATACAAATGATGAAGAATCTTCATCCTTCTTCGACGAGGAGGGAGC CGGTATGA
AA sequence Show only first row Show all	>Lus10005142 pacid=23141932 polypeptide=Lus10005142 locus=Lus10005142.g ID=Lus10005142.BGIv1.0 annot-version=v1.0 MENPRVPANGGGSYWLDACEDISLDDLDAPSVAQPPIIIEGGGGGVGSSNQDAADFFGGIDHILDSIKNGRGGLPLPVDGKLEAIKVENVDNEDNKVGVV KVENVDNGNKFSGRNGHGLVRKRNWEIESCGKRGRLTSGCRYERGGRQYDSRKRGREWNDVDRKERAQGRGRGWFGVNGVKRDGREREWREREQRGYWER DNTGSNGIVFRPGTWESDHKNEEKLIGEKNGVESAEKVETSPEEPKEKVPEEHARKYQLDVLEQAKKRNRIAFLETGAGKTLIAVLLMKSISSDLEKSNK KMLAVFLVPKVPLVYQQAEVIRERTGFQVGHFCGEMGHDFWDTRRWQREFETKQVLVMTAQILLNILRHSIIKMESINLLILDECHHAVKKHPYSLVMSE FYHTTEKEKRPSVFGMTASPVNLKGVSSQVDCAIKISNLESKLDSVVCTVEDRKELEKHVPMPSEIVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRK SKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIQKLRAINYTLRELGQWCAYKVALSFLAALQNDERSTYQLDVQLQESYLEKVVSLLQCQVTEGAA TEKDTKVADEDNGIAQAETDPEEIEEGELPDDHVVSCGEHFDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLS FIKSASLIGHNNSQEMRTSQMQDTIARFWDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARN SEETLRREAIERTDLSHLKDTSRVISVDPVPGTIYQVASTGAVVSLNSAVGLIHFYCSKLPSDRYSILRPEFIMENHEKPGGPIEYSCKLQLPCNAPSEK LEGPAVCLAGCKKLHEMGAFTDMLLPDRGSREDKEKENDESEPLPGTARHREFYPEGVADILQGEWILSGKDSCSESKVFRLYMYAVSSVNSGTSKDPYI SQVSEFAVFFGSALDAEVLSMTVDLFIARTMTTNASLVFKGAIEINESQLASLKNFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVVGVKSVDPIVEID WDLVREIIDSDAWTNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGLAFGQKSHPTYGIRGAVAQFDIVRASGLVPNRDTSATQTTELSKGKLMMADT CLPTEDLVGMVVTAAHSGKRFFVDSIRYDMTAENSFPRKEGYLGPLEYSSYAEYYKQKYGVELVYKSQRLLRGRGVSYCKNLLSSRFEHSEGAQRLPSIM RRVESMLLAIQLKHAIKYPVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHKGQLTRMRQQMVSNMVLYQFALNKRLQSYIQAD RFAPSRRRLLGFCPSLMKIQMMKNLHPSSTRREPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005142 [exp]	0	1
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10032761 [exp]	2.8	0.8230
AT5G28850			Calcium-binding EF-hand family...		Lus10011811 [exp]	3.2	0.8615
AT3G02065			P-loop containing nucleoside t...		Lus10020088 [exp]	8.8	0.8273
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	9.5	0.8177
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10014746 [exp]	11.2	0.7780
AT2G41790			Insulinase (Peptidase family M...		Lus10042064 [exp]	11.6	0.8068
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	11.9	0.8282
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10012885 [exp]	15.3	0.7928
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10030467 [exp]	15.5	0.7657
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026574 [exp]	15.7	0.7756

Compare expression of checked genes

Lus10005142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.