Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35580 147 / 6e-39 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 149 / 8e-39 NAC ANAC014 NAC 014 (.1.2) AT5G24590 142 / 2e-37 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT3G49530 135 / 1e-34 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT4G01550 134 / 1e-34 NAC ANAC069, NTM2 NAC with Transmembrane Motif 2, NAC domain containing protein 69 (.1.2) AT5G39820 130 / 5e-34 NAC ANAC094 NAC domain containing protein 94 (.1) AT1G26870 131 / 1e-33 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G02230 129 / 4e-33 NAC ANAC004 NAC domain containing protein 4 (.1) AT3G17730 125 / 4e-33 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G17260 130 / 5e-33 NAC ANAC086 NAC domain containing protein 86 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030175 [exp] 600 / 0 AT4G35580 146 / 1e-37 NAC transcription factor-like 9 (.1.2.3) Lus10030174 [exp] 155 / 7e-44 AT4G35580 152 / 5e-43 NAC transcription factor-like 9 (.1.2.3) Lus10010148 [exp] 156 / 1e-41 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10033251 [exp] 147 / 2e-38 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 147 / 3e-38 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10005144 [exp] 140 / 3e-38 AT4G35580 142 / 3e-39 NAC transcription factor-like 9 (.1.2.3) Lus10015367 [exp] 128 / 5e-33 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10032919 [exp] 130 / 1e-32 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10015587 [exp] 130 / 1e-32 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G107500 [exp] 181 / 1e-51 AT4G35580 143 / 3e-37 NAC transcription factor-like 9 (.1.2.3) Potri.002G181800 [exp] 182 / 2e-51 AT4G01550 138 / 1e-35 NAC with Transmembrane Motif 2, NAC domain containing protein 69 (.1.2) Potri.002G182000 [exp] 148 / 2e-41 AT4G35580 186 / 9e-56 NAC transcription factor-like 9 (.1.2.3) Potri.002G182400 [exp] 153 / 8e-41 AT4G35580 158 / 4e-42 NAC transcription factor-like 9 (.1.2.3) Potri.014G108100 [exp] 147 / 4e-40 AT5G17260 139 / 3e-37 NAC domain containing protein 86 (.1) Potri.014G107900 [exp] 144 / 4e-40 AT4G35580 183 / 7e-55 NAC transcription factor-like 9 (.1.2.3) Potri.014G108000 [exp] 144 / 7e-40 AT4G35580 176 / 6e-52 NAC transcription factor-like 9 (.1.2.3) Potri.002G154200 [exp] 142 / 9e-40 AT4G35580 169 / 5e-50 NAC transcription factor-like 9 (.1.2.3) Potri.014G076000 [exp] 141 / 3e-39 AT4G35580 161 / 5e-47 NAC transcription factor-like 9 (.1.2.3) Potri.011G149300 [exp] 149 / 1e-38 AT1G33060 387 / 2e-125 NAC 014 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10005143 pacid=23141920 polypeptide=Lus10005143 locus=Lus10005143.g ID=Lus10005143.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCGTCAGTAGGTTACAGGTTCCACCCAACAGACGAAGAGCTCATCGCCCATTACCTGAAGCTGAAGATGAACGGCCACGATTCCCTCGTCG ACAAAGTCATCCCCGAAGTCGACGTCTACCGCTTGGAGCCTTCCGACTTGCCCAATTATTCGGTGGTGGGATCTTCGTCGGACGATCAAGTGTGGTATTT CTACTGCCGGCTTGATTACAAGTACAAGAACAGCAAGAGGGCTAACAGGGCGACGGAGAGTGGGTTCTGGAAAGTCACCGGAAAGCCTAGGTTCATCGTG GCTAGAGACTCTGGCGAGCAGATTGGAGTCAAGAAGACTTTGGTTTTCTTCTACAAAGCCCGCAGCGGCGATGCTAAGCCGGTCAGTACTGATTGGGTGA TCCACCAATACCAGGCCACTACCCTGCTCCCTGATCAGACTGAATATGTGATCTGCAAACTGAAGAACAAGGGAGATTGTTGGACCAAGAATTCGGCTGC TACGACTAGTGGTGACCCGAGTCATTCCACATCAGCAGCTTCTGATGCTGGAAACCATGGAGCATCAATGCAAGTGGGAGATTCAGATACTGTAGTCGTC GGGAACAGTCCTTCGACGATCCAACCACGGTTGTACATCGAGGATGAAGGTCTTTCCCTCGATGATTTCTTGCAAGGTGATGATGACTTGTTCTTCAATC AACCCGATAAGGGACCATCAACTTTGCTTCGATTCGACTTTGATGAAGAGGAGGAAGTGGATCCAGACTCGTATCTTGTTATCCCAGATGACTACCTCAG TAATGAAACTGCATATGCTCACCCTAATGACTACAGACCGGAAAAGGCGTTGAGCACATATCATGTTGAGGACGACGTGAAAGAGTTCAACGTGATAACA TCAGAAGTTCCTGAGATGTACCAACTTTTCGCTGGCATACCTCAATCAAAATCTACTTCCAGAAACAATCAGCATCAGCTCCAATCTTTCGTGGTATCCA AAGATAAGGCTGGGGAGGGAACAAGAGAATCACTCACTGGAGCTAAGAAGGATTTACAACTGGAAGGAGCTGGCGGGATGGAAATACCACTGATCGGAGC AGAAAGACCGCTGCGTGTTATGCACCATCGTCAAGGAGCTAAGAAGGAAATACAACTGGTCAGAGCTGGTGGGATGAAAATACCACAGATCGGAGCACAG AGACCAGTACGGGTTATGAACCTGCGGTCAGCGATGAAGCTAAAGTCCGCAACTCGTACACCTGGGAAAGGTTGGAAGGTCGGTTCGTTGATAGAAATGG TTGAGGTTCCAGAAAGCCATATGCAAAGTCCACCAACAGTATACATGGCCAACATTCTGGTGGCACTGCTGGCTTTCGCATTCTTCATCTATGAGCTGCC ATTTCTTCGTTGA
AA sequence Show only first row Show all	>Lus10005143 pacid=23141920 polypeptide=Lus10005143 locus=Lus10005143.g ID=Lus10005143.BGIv1.0 annot-version=v1.0 MAAASVGYRFHPTDEELIAHYLKLKMNGHDSLVDKVIPEVDVYRLEPSDLPNYSVVGSSSDDQVWYFYCRLDYKYKNSKRANRATESGFWKVTGKPRFIV ARDSGEQIGVKKTLVFFYKARSGDAKPVSTDWVIHQYQATTLLPDQTEYVICKLKNKGDCWTKNSAATTSGDPSHSTSAASDAGNHGASMQVGDSDTVVV GNSPSTIQPRLYIEDEGLSLDDFLQGDDDLFFNQPDKGPSTLLRFDFDEEEEVDPDSYLVIPDDYLSNETAYAHPNDYRPEKALSTYHVEDDVKEFNVIT SEVPEMYQLFAGIPQSKSTSRNNQHQLQSFVVSKDKAGEGTRESLTGAKKDLQLEGAGGMEIPLIGAERPLRVMHHRQGAKKEIQLVRAGGMKIPQIGAQ RPVRVMNLRSAMKLKSATRTPGKGWKVGSLIEMVEVPESHMQSPPTVYMANILVALLAFAFFIYELPFLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Lus10005143 [exp]	0	1
AT5G41770			crooked neck protein, putative...		Lus10034294 [exp]	9.4	0.7449
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	10.0	0.7466
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031223 [exp]	11.1	0.7351
AT1G52420			UDP-Glycosyltransferase superf...		Lus10037523 [exp]	13.6	0.7243
AT2G31440			unknown protein		Lus10027036 [exp]	15.6	0.7162
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10037279 [exp]	19.9	0.6897
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10008356 [exp]	22.4	0.7275
AT5G49840			ATP-dependent Clp protease (.1...		Lus10010691 [exp]	24.0	0.7199
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10026118 [exp]	24.1	0.6922
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	27.4	0.7237

Compare expression of checked genes

Lus10005143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.