Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35580 139 / 3e-38 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 133 / 2e-35 NAC ANAC014 NAC 014 (.1.2) AT5G53950 129 / 3e-35 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15510 127 / 1e-34 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT3G17730 123 / 3e-34 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G03200 127 / 9e-34 NAC ANAC045 NAC domain containing protein 45 (.1) AT5G17260 125 / 4e-33 NAC ANAC086 NAC domain containing protein 86 (.1) AT5G24590 123 / 1e-32 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT4G10350 120 / 2e-32 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1) AT3G49530 122 / 3e-32 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030174 [exp] 434 / 4e-156 AT4G35580 152 / 5e-43 NAC transcription factor-like 9 (.1.2.3) Lus10010098 [exp] 161 / 9e-50 AT4G01550 94 / 5e-23 NAC with Transmembrane Motif 2, NAC domain containing protein 69 (.1.2) Lus10033251 [exp] 143 / 3e-39 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 142 / 4e-39 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10005143 [exp] 139 / 2e-38 AT1G33060 149 / 2e-39 NAC 014 (.1.2) Lus10030175 [exp] 138 / 3e-37 AT4G35580 146 / 1e-37 NAC transcription factor-like 9 (.1.2.3) Lus10010148 [exp] 135 / 3e-36 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10013782 [exp] 125 / 1e-33 AT4G10350 325 / 5e-110 BEARSKIN 2, NAC domain containing protein 70 (.1) Lus10042284 [exp] 122 / 2e-33 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G154200 [exp] 209 / 4e-68 AT4G35580 169 / 5e-50 NAC transcription factor-like 9 (.1.2.3) Potri.014G107900 [exp] 195 / 3e-62 AT4G35580 183 / 7e-55 NAC transcription factor-like 9 (.1.2.3) Potri.014G108000 [exp] 187 / 5e-59 AT4G35580 176 / 6e-52 NAC transcription factor-like 9 (.1.2.3) Potri.002G182300 [exp] 184 / 9e-58 AT4G35580 184 / 4e-55 NAC transcription factor-like 9 (.1.2.3) Potri.002G182000 [exp] 183 / 1e-57 AT4G35580 186 / 9e-56 NAC transcription factor-like 9 (.1.2.3) Potri.014G076000 [exp] 181 / 4e-57 AT4G35580 161 / 5e-47 NAC transcription factor-like 9 (.1.2.3) Potri.014G107700 [exp] 179 / 1e-55 AT4G35580 178 / 2e-52 NAC transcription factor-like 9 (.1.2.3) Potri.011G149300 [exp] 137 / 1e-36 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.012G007500 [exp] 132 / 2e-35 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.002G181800 [exp] 131 / 3e-35 AT4G01550 138 / 1e-35 NAC with Transmembrane Motif 2, NAC domain containing protein 69 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10005144 pacid=23141914 polypeptide=Lus10005144 locus=Lus10005144.g ID=Lus10005144.BGIv1.0 annot-version=v1.0 ATGTCGAGTAATGCAAGCCGAGTTGGATGGAGGTTCCATCCATCAGAGGAACAACTGGTGAACCGCTATCTGAAGCTGAAGATGCTGGGCTACGATCACG ACGTTCGCCACATTGCTGAAGTCAATGTTAACAAGTTCGAACCGTGGCAGCTACTGGGGCAGGCATCGAGCGAAGTCGATTCGGATGAATCGGTTTGGTA CTTCTTGTCTTGTCCCGATTACAAGTATGTCAATAGCAAAAGATCTAACAGGACGACGAAGAAAGGGTACTGGAAGCCTACCGGCAGGGAAAGGATTGTG AGGGCTGAAAGCACGAACGAGGAGATTGGTACGAAGAAGACTTTGGTTTTCTATAAAGGTCGGGTTCTTGGTGGGGTTAAGACCGATTGGATCATGCACG AGTATAAGCCTCTCTTCAGTTTTCCTAACCAGCGTGATTTTCTTCTCTACAAATTAATGGACAAATCATCATCATCAACATCAACTAATGATGACGACGA AGAGCAACCAAATGTTGAAAGAGGAGAATCAAGTACTGGGATGTCTTCCAATTTCCCAAATCCAAATCCAAGTTCATACGAGAATGCTCCCATCCCAATC GAGCCCAAGGAAAACTCTCAGTTACAAGCTGATCTAGATGGGTTCAGTGGGTATGATGAAATGAGTTACAACCTTAACTCAGTGACGCAGCAGCCATGGA CATGGAACACTGATGAAAACTTGTCTTATGATCATTCTTTCTATGGGTAA
AA sequence Show only first row Show all	>Lus10005144 pacid=23141914 polypeptide=Lus10005144 locus=Lus10005144.g ID=Lus10005144.BGIv1.0 annot-version=v1.0 MSSNASRVGWRFHPSEEQLVNRYLKLKMLGYDHDVRHIAEVNVNKFEPWQLLGQASSEVDSDESVWYFLSCPDYKYVNSKRSNRTTKKGYWKPTGRERIV RAESTNEEIGTKKTLVFYKGRVLGGVKTDWIMHEYKPLFSFPNQRDFLLYKLMDKSSSSTSTNDDDEEQPNVERGESSTGMSSNFPNPNPSSYENAPIPI EPKENSQLQADLDGFSGYDEMSYNLNSVTQQPWTWNTDENLSYDHSFYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	1.4	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	2.0	1.0000
					Lus10024141 [exp]	3.0	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	3.5	1.0000
					Lus10013255 [exp]	3.9	1.0000
					Lus10013259 [exp]	4.2	1.0000
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	4.6	1.0000
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	4.9	1.0000
					Lus10028570 [exp]	5.2	1.0000
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10029435 [exp]	5.5	1.0000

Compare expression of checked genes

Lus10005144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.