Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02270 570 / 0 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) AT5G54130 563 / 0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) AT3G18500 68 / 4e-12 DNAse I-like superfamily protein (.1.2.3) AT1G73875 59 / 4e-09 DNAse I-like superfamily protein (.1) AT5G11350 49 / 5e-06 DNAse I-like superfamily protein (.1) AT3G58560 45 / 0.0001 DNAse I-like superfamily protein (.1) AT1G50700 0 / 1 CPK33 calcium-dependent protein kinase 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030173 [exp] 942 / 0 AT1G02270 568 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) Lus10010095 [exp] 759 / 0 AT1G02270 570 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) Lus10036357 [exp] 58 / 8e-09 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10014775 [exp] 58 / 9e-09 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10008086 [exp] 52 / 8e-07 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1) Lus10013119 [exp] 51 / 2e-06 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10032490 [exp] 50 / 2e-06 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1) Lus10042185 [exp] 42 / 0.0008 AT1G74740 777 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10040071 [exp] 42 / 0.0008 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G108200 [exp] 632 / 0 AT5G54130 620 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.002G182500 [exp] 606 / 0 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.012G007600 [exp] 580 / 0 AT5G54130 721 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.015G004200 [exp] 570 / 0 AT5G54130 719 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.012G057100 [exp] 49 / 8e-06 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1) Potri.018G032300 [exp] 47 / 2e-05 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.015G066200 [exp] 45 / 0.0001 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.012G071700 [exp] 45 / 0.0002 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10005145 pacid=23141922 polypeptide=Lus10005145 locus=Lus10005145.g ID=Lus10005145.BGIv1.0 annot-version=v1.0 ATGGTACGTGAAATCTCTGTTAATTTCATCTTCAAACTCGGAGCGATTGCTTCTGTGATGACGACCTTCGCATTTCTGCCGTTTGTGAACAAAATTGATC GGCCGGGTGATGCCGTTGGTTTGGAACAGGTGGCTGTGGTGGAGAATGATCCGAATATCCTAAACGGAGCGTCCGTTCCTAGACCGCCGCCGGCAGACGA TACTGCGTGCACGACCACTACGGAAGCAGCGACGGCAATGACAGAGGAACCGTGCCACATTTCTTGCACTACTTTCAACATCCTTGCTCCTATTTACAAG CGCCTCGATAATAAGAACCAAAGCGCTCGTGAGAGCGATTTCAAATCCTTCTGGCTTTCGCGGAACCAGATGATTTTGGAGTGGTTGCTCATGGAGCGAA CCTCCATCATTTCCCTCCAGGAATTCTGGACTGGAAATGAAGATTTTGTGCATATGTACGAGGACAAGCTCTGTGATGCTGGCTATTTCACCTTTCAACT TGCCCGAACGAACAACCGAGGAGATGGCTTGCTAATGGCAGTGCATAAGGAGTACTTTAGGATTATAAACTATAGGGAGTTGCTCTTTAATGATTTCGGT GATCGTGTCGCCCAGCTATTACACGTTCATTTGATATTACCCACGTCGTGTCATCGTAAAAGTGATACTCGACAAGAGCTTCTCATCGTGAATACGCATT TGTTATTCCCTCATAATTCCAGCCTGTCCATTGCACGGCTGCATCAGGTCCACCAAATATTACAATATGTAGAGACATATCAGCGAGAAAACAAACTCGG AAACATTCCTGTCATTCTATCCGGTGATTGGAATGGAAGCAAACGCGGGCGTGTCTATAAATTCCTTCGTTCTCAAGGGTTTGTATCGTCGTATGACATT GCTCATAAGTACACAGACAGTGATGCTGATGCTCACAGATGGGTGAGTCACCGAAACCATAGGGGTAACATCTGTGGCGTTGATTTCATATGGCTCCGTA ATCCTAATGATGAACCAAGGAAACCATTGAAGACAAGTTGGGCCGAAACAGCATTTGGTATAATAAAGTATCAGCTCCAAAAGGCTTCATTGAAAGAGAG TGATGCCTTTGCATTTCTGAAGGCTGATAACCCTGGCGATTTCATAACATACTCAACCCTATGCGAAGGCCTTCGCCAGGTTCACCTGAGTGGTCATCCT TACGGACTGAGTTTCCAGGAGACGAAAGACCTATGGAACCAAGCAGACATCGACGGGAATGGAGTCATCGATTCTGAAGAGTTTAAGAGGATATGGAACG CATCGTGCTGTTCGGTACAACGGGACGAGAACTGCAGAGAAAATGGTGAAGAAATGATGGGTCTGATTGTGAAGGATGCAGTTCTGTTTCCAAGAGAAGT AGAGAGGGGAATGTGGCCGGAGAACTACTCTCTGTCCGATCACGCTCGACTCACCGTCATATTTTCTCCGGTGAGGTTGCGGTTCAAGGAGGAGAAAGTA GTTTTATAA
AA sequence Show only first row Show all	>Lus10005145 pacid=23141922 polypeptide=Lus10005145 locus=Lus10005145.g ID=Lus10005145.BGIv1.0 annot-version=v1.0 MVREISVNFIFKLGAIASVMTTFAFLPFVNKIDRPGDAVGLEQVAVVENDPNILNGASVPRPPPADDTACTTTTEAATAMTEEPCHISCTTFNILAPIYK RLDNKNQSARESDFKSFWLSRNQMILEWLLMERTSIISLQEFWTGNEDFVHMYEDKLCDAGYFTFQLARTNNRGDGLLMAVHKEYFRIINYRELLFNDFG DRVAQLLHVHLILPTSCHRKSDTRQELLIVNTHLLFPHNSSLSIARLHQVHQILQYVETYQRENKLGNIPVILSGDWNGSKRGRVYKFLRSQGFVSSYDI AHKYTDSDADAHRWVSHRNHRGNICGVDFIWLRNPNDEPRKPLKTSWAETAFGIIKYQLQKASLKESDAFAFLKADNPGDFITYSTLCEGLRQVHLSGHP YGLSFQETKDLWNQADIDGNGVIDSEEFKRIWNASCCSVQRDENCRENGEEMMGLIVKDAVLFPREVERGMWPENYSLSDHARLTVIFSPVRLRFKEEKV VL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02270			Calcium-binding endonuclease/e...		Lus10005145 [exp]	0	1
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	10.3	0.7530
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10042459 [exp]	13.2	0.7537
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10006516 [exp]	14.0	0.7486
AT2G37290			Ypt/Rab-GAP domain of gyp1p su...		Lus10014020 [exp]	14.4	0.7248
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10036237 [exp]	17.1	0.7115
AT3G24820			BSD domain-containing protein ...		Lus10025929 [exp]	18.8	0.6747
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10038376 [exp]	19.1	0.6747
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Lus10036170 [exp]	20.0	0.7202
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10035596 [exp]	24.0	0.6817
AT4G37810			unknown protein		Lus10011570 [exp]	27.7	0.7167

Compare expression of checked genes

Lus10005145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.