Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61610 476 / 9e-171 Galactose mutarotase-like superfamily protein (.1) AT4G23730 414 / 1e-146 Galactose mutarotase-like superfamily protein (.1) AT5G57330 400 / 7e-141 Galactose mutarotase-like superfamily protein (.1) AT5G14500 359 / 7e-125 aldose 1-epimerase family protein (.1) AT3G01590 353 / 2e-122 Galactose mutarotase-like superfamily protein (.1.2) AT4G25900 307 / 3e-104 Galactose mutarotase-like superfamily protein (.1) AT5G66530 122 / 2e-32 Galactose mutarotase-like superfamily protein (.1.2) AT1G55370 45 / 5e-05 NDF5 NDH-dependent cyclic electron flow 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003035 [exp] 634 / 0 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 513 / 0 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 509 / 0 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10000254 [exp] 459 / 1e-164 AT3G61610 350 / 4e-121 Galactose mutarotase-like superfamily protein (.1) Lus10028739 [exp] 447 / 8e-160 AT4G23730 474 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10017549 [exp] 447 / 1e-159 AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10020015 [exp] 398 / 6e-140 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 392 / 1e-137 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 390 / 8e-137 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G167200 [exp] 476 / 8e-171 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G095300 [exp] 432 / 1e-153 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 416 / 4e-147 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 414 / 2e-146 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 402 / 1e-141 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 399 / 2e-140 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 368 / 2e-128 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.007G023200 [exp] 129 / 2e-35 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.019G034000 [exp] 57 / 4e-09 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10005147 pacid=23141927 polypeptide=Lus10005147 locus=Lus10005147.g ID=Lus10005147.BGIv1.0 annot-version=v1.0 ATGGGTCATCATTCTACGGTGATAGAAATCACAAAGGATTGCAATGGCATCGACCAGGTTCTGCTCCGGAATCCGAATGGGGCTTCTGCTAAGGTCAGTT TACATGGAGCACAAGTGGTTTCATGGAGGGATGAACGAGGTGAAGAACTTCTCTTCACGAGCAACAAGCCGATATTGAAGCAGCCGAAGACAATAATGAG GGGAGGGATCCCAATCTGCTTCCCTCAATTTGGCAACTGCGGTTCCCTCGAACAGCAAGGATTCGCCAGGAACAAAGTTTGGAGGGTTGATGAAGATCCT CCTCCTTTGCACAGTCATAATTCTTGCGGTAGATCGTTCGTCGACCTCGTGTTTAAATCGTGTGAAGAAGACCTTAAATGCTGGCCTCATAGCTTCGAAT TCAGGATGAGGGTGGCGCTTTCGACTAACGGGGATTTGATGCTGGCATCGCGAATCCGGAATGTCAATGGGAAGGCATTTAGCTTCTCGTTCGGATATCA CACACATCTCTCGGTTTCGGACATCAGTGAAGTAAGGATAGAAGGACTTGAAACTCTCGACTACTTAGACAACCTCTGCCACCGAGAACGATGCACGGAG CAGGGAGATGCAATAACCTTCGAATCTGAGTTGGATCGTGTTTATCTCGCGGCACCAAACGTTGTTGCAATACTTGATCATGAGCGGAAGCGGACATATG TTGTAAGAAAAGAGGGACTACCGGACTTTGCAGTGTGGAATCCGTGGGAGAAGAAATCGAGGGTGATGCCCAATTTCGGAGACGAAGAGTATAAAAAGAT GGTCTGTGTGGACGGAGCTGCAATCGAGAAACCCATTACGCTGAAGCCTGGGGAGGAATGGACGGGCCGGATTCAGATATCGATTATGCCTTCCAGTTTT TGTAACCTCTAA
AA sequence Show only first row Show all	>Lus10005147 pacid=23141927 polypeptide=Lus10005147 locus=Lus10005147.g ID=Lus10005147.BGIv1.0 annot-version=v1.0 MGHHSTVIEITKDCNGIDQVLLRNPNGASAKVSLHGAQVVSWRDERGEELLFTSNKPILKQPKTIMRGGIPICFPQFGNCGSLEQQGFARNKVWRVDEDP PPLHSHNSCGRSFVDLVFKSCEEDLKCWPHSFEFRMRVALSTNGDLMLASRIRNVNGKAFSFSFGYHTHLSVSDISEVRIEGLETLDYLDNLCHRERCTE QGDAITFESELDRVYLAAPNVVAILDHERKRTYVVRKEGLPDFAVWNPWEKKSRVMPNFGDEEYKKMVCVDGAAIEKPITLKPGEEWTGRIQISIMPSSF CNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61610			Galactose mutarotase-like supe...		Lus10005147 [exp]	0	1
AT3G61610			Galactose mutarotase-like supe...		Lus10003035 [exp]	1.0	0.9942
AT1G68300			Adenine nucleotide alpha hydro...		Lus10034337 [exp]	7.1	0.9168
					Lus10037270 [exp]	14.4	0.9160
AT1G57790			F-box family protein (.1)		Lus10014208 [exp]	16.0	0.8551
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Lus10005755 [exp]	16.7	0.9090
AT3G01430			unknown protein		Lus10014527 [exp]	18.5	0.9212
AT1G60010			unknown protein		Lus10030651 [exp]	21.7	0.8379
AT1G60010			unknown protein		Lus10030835 [exp]	28.8	0.9127
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Lus10028173 [exp]	29.2	0.9008
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	34.5	0.9071

Compare expression of checked genes

Lus10005147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.