Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61620 353 / 4e-124 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT4G27490 86 / 1e-19 3'-5'-exoribonuclease family protein (.1) AT3G46210 70 / 7e-14 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003036 [exp] 528 / 0 AT3G61620 370 / 9e-131 3'-5'-exoribonuclease family protein (.1.2) Lus10000255 [exp] 286 / 2e-98 AT3G61620 280 / 4e-97 3'-5'-exoribonuclease family protein (.1.2) Lus10037395 [exp] 96 / 3e-23 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1) Lus10041318 [exp] 81 / 6e-18 AT4G27490 414 / 4e-148 3'-5'-exoribonuclease family protein (.1) Lus10037991 [exp] 62 / 4e-11 AT3G46210 377 / 1e-133 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10009221 [exp] 60 / 2e-10 AT3G46210 387 / 4e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10034605 [exp] 41 / 0.0006 AT1G60080 425 / 1e-150 3'-5'-exoribonuclease family protein (.1) Lus10021789 [exp] 41 / 0.0008 AT1G60080 439 / 7e-157 3'-5'-exoribonuclease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G094300 [exp] 405 / 1e-144 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.004G212500 [exp] 97 / 7e-24 AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1) Potri.009G010600 [exp] 92 / 5e-22 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1) Potri.018G043600 [exp] 66 / 2e-12 AT3G46210 404 / 2e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Lus10005148 pacid=23141908 polypeptide=Lus10005148 locus=Lus10005148.g ID=Lus10005148.BGIv1.0 annot-version=v1.0 ATGGAGTTCGTCAGCCCCGAAGGACTTCGTCTCGACGGTCGCCGTCCTATGGAAATGAGGCAGCTTAGAGCAGAGATTGGTGCTGTGGCAAGAGCCGACG GGTCTGCTGTTTTTGAAATGGGCAACACCAAAGTAATTGCTGCTGTGTATGGTCCTAGAGAGGTCCAGAACAAGAGCCAGCTGAACAATGACCATGCATT GGTGAGATGCGAGTACACAATGGCTAATTTCAGTACTGGTGACCGCAAGCGAAAACCCAAGGGAGATAGGCGATCAACAGAGATATCTTTAGTTATCCGT CAGACTATGGAAGCCTGCATATTGACTCATTTAATGCCCCGTTCTCAGATTGATATCTATGTCCAAGTTCTTCAAGCCGATGGAGGTGAGTGTAAACAGT CTCACTTTTTGAAATTGGTTTACAACGTTGCTGGAGAATCATCCAGATGCTATTTCTTTGTGGTGCTGAAATATCTACCTGTAGGAACTAGATCTGCATG TATAAATGCTGCTACATTGGCCCTAGCTGATGCTGGGATCCCAATGTCCGACCTTGTGACTTCCTGCAGTGCTGGTTACCTCAACAGCACTCCTCTGCTC GATCTGAATTATCTCGAAGATAGCGCTGGAGGTCCTGATGTTACCGTCGGTATTCTACCAACGCTAGACAAAGTCACTCTTCTTCAGATGGATGCCAAGT TGCCAGTTGATATCCTTGAAAACGTTATGCAACTCGCAACCGAAGGCTGCAAGGCGATAGCAATTTACATACGCGAGATATTGCTTGAGAACACCAAGAA CCTAGAGTATCGACGGGGCATATGA
AA sequence Show only first row Show all	>Lus10005148 pacid=23141908 polypeptide=Lus10005148 locus=Lus10005148.g ID=Lus10005148.BGIv1.0 annot-version=v1.0 MEFVSPEGLRLDGRRPMEMRQLRAEIGAVARADGSAVFEMGNTKVIAAVYGPREVQNKSQLNNDHALVRCEYTMANFSTGDRKRKPKGDRRSTEISLVIR QTMEACILTHLMPRSQIDIYVQVLQADGGECKQSHFLKLVYNVAGESSRCYFFVVLKYLPVGTRSACINAATLALADAGIPMSDLVTSCSAGYLNSTPLL DLNYLEDSAGGPDVTVGILPTLDKVTLLQMDAKLPVDILENVMQLATEGCKAIAIYIREILLENTKNLEYRRGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10005148 [exp]	0	1
AT1G68730			Zim17-type zinc finger protein...		Lus10019154 [exp]	3.0	0.8379
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10000255 [exp]	4.5	0.8329
AT5G19370			rhodanese-like domain-containi...		Lus10000413 [exp]	6.9	0.8077
AT3G54900		ATGRXCP, CXIP1	GLUTAREDOXIN, CAX interacting ...		Lus10041501 [exp]	7.5	0.7950
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10028905 [exp]	7.9	0.8287
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10000540 [exp]	8.9	0.8178
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022878 [exp]	11.5	0.7973
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	12.4	0.8112
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10014728 [exp]	12.6	0.8007
AT3G48210			unknown protein		Lus10042089 [exp]	13.4	0.8173

Compare expression of checked genes

Lus10005148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.