Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46370 762 / 0 FIN219, JAR1 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) AT4G03400 591 / 0 GH3-10, DFL2 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) AT2G23170 420 / 1e-140 GH3.3 Auxin-responsive GH3 family protein (.1) AT4G37390 418 / 1e-139 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT4G27260 416 / 9e-139 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT5G54510 409 / 4e-136 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT1G59500 399 / 1e-132 GH3.4 Auxin-responsive GH3 family protein (.1) AT2G14960 393 / 3e-130 GH3.1 Auxin-responsive GH3 family protein (.1) AT1G48660 390 / 1e-129 Auxin-responsive GH3 family protein (.1) AT1G23160 386 / 1e-127 Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003039 [exp] 1120 / 0 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10039797 [exp] 559 / 0 AT4G03400 769 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 402 / 7e-134 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 400 / 6e-133 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 394 / 2e-130 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 388 / 1e-127 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 386 / 2e-127 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10018565 [exp] 382 / 5e-126 AT4G03400 495 / 1e-169 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 374 / 2e-122 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G168200 [exp] 906 / 0 AT2G46370 788 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Potri.014G095500 [exp] 905 / 0 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Potri.019G103500 [exp] 610 / 0 AT4G03400 897 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.013G144300 [exp] 602 / 0 AT4G03400 852 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 417 / 2e-139 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 414 / 1e-138 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.007G050300 [exp] 406 / 4e-135 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 402 / 3e-133 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 395 / 6e-131 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.013G151100 [exp] 385 / 8e-127 AT5G54510 1014 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF03321 [flax] [poplar] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Lus10005151 pacid=23141921 polypeptide=Lus10005151 locus=Lus10005151.g ID=Lus10005151.BGIv1.0 annot-version=v1.0 ATGGAGCTAGTCGACACGAGTAAGGTCATCGAAGAATTTGAAGCAATGACGAAAGATGCTGAGAGTGTACAGAGAGAGACTCTGAAGAAGATCTTGGAGG AAAATGGTTCGGCTGAGTACTTAAAGAATCATGGCCTTGATGGGAGAACTGACCCACTGAGTTTCACTTCTTGTGTTCCTCTCGTGACTCATAACGATTT GGAGCCTTATATCCAGAGAATTGCTGATGGTGACTCTTCCCCTGTTCTCACTGGAAAACCTATAACCAACATTTCCTTGAGTTCTGGTACTACTCAGGGG AAACCAAAGCTTATACCTTTTAATGATGAACTGATGGATACTACCCTGCAGATATATACAACTTCTTTTGCTTTTAGAAGCAGAGATTTCCCACTTGGAA ATGGGAAGGCTTTACAGTTCATCTACAGCAGCAGGCCGGGGAAGACGAAAGGGGGATTGATGTCGGGGACTGCTACGACTAACGTATTCCGGAACGTTCT ATTTAAGCAGGCAATGAGGGCTCTTCAGTCGCAGTGTTGCAGCCCCGACGAGGTCATTTTCGGGACGGACTTCCAGCAGTCATTGTACTGCCATCTATTG TGCGGCCTTATATTCCGGGAGGAGATTCAGTTCGTGTGTTCGACCTTTGCTCATAGCATAGTTCTCGGCTTCCGGACCTTGGAGGAAGTTTGGCAAGAGC TCTGCTGCGACATAAGAGAAGGCGTGCTTAGCAGCCGAGTCACGACCCCTGCTGTGAGAACAGCCATGATGAAGTTGCTTAAACCGGACCCCGAATTGGC TGACTTGATCCACGAGAAGTGCGTGGGGTTGAGTAATTGGTATGGGATGATACCGCAGCTTTTCCCCAACGTGAAGTATGTGTATGGTATCATGACCGGC TCCATGGAGCCTTATCTGAAGAAATTGAGGCACTACGCAGGGGATGTCCCTTTGTTGAGTGCCGATTATGGTTCTTCGGAAGGTTGGATCGGAGCGAATG TCAACCCGAATCTACCCCCTGAATCCGCTACGTTCGCTGTTCTCCCCAATATAGGATATTTCGAGTTCATCCCTCTCAGTAAGAATCCTGACGTGACGCC CTTGAGTCTGACTCAAGTTAAGATCGGTGAAGAGTACGAGGTGGTCCTCACAAATGTCGCAGGTTTGTACAGGTACAAGCTAGGGGACGTAGTAAAAGTG ATGGGGTTCCACAACTCAACCCCGGAACTGAAGTTCGTCTGTAGGAGAAACTTACTGCTGACGATAAACATCGACAAGAACACCGAAAAAGACTTGCAGC TGGCGGTGGAAGAAGCAGGGAAGCTACTAGCAGGGGAGAAGCTGGAAGTGGTAGATTTCAGCAGCCAAGTAGACTCATCTTCGGACCCGGGGCATTACGT CATATTTTGGGAAGTCAACGGAGAACCCAGAGAGGAAGTGTTGAGGGAGTGTTGCAGTAAGCTAGACAAATCCTTTGTCGATCTGGGCTACGTCAGCTCG CGGAGGGTGAAGACTATCGGACCTTTGGAGCTCCGGGTGGTGAAGAGGGGAACTTTCCAGAAGATTCTGGATCATTACCTGGGATTGGGAGGCGCCGTGA GCCAGTTCAAGACGCCCAGGTGTGTTGGGCCGATGAACAAAGTTGTGTTGGAAATCCTGTGCAGCAATGTTGCTCAAACTTTCTTCAGTACTGCTTATGA TTAG
AA sequence Show only first row Show all	>Lus10005151 pacid=23141921 polypeptide=Lus10005151 locus=Lus10005151.g ID=Lus10005151.BGIv1.0 annot-version=v1.0 MELVDTSKVIEEFEAMTKDAESVQRETLKKILEENGSAEYLKNHGLDGRTDPLSFTSCVPLVTHNDLEPYIQRIADGDSSPVLTGKPITNISLSSGTTQG KPKLIPFNDELMDTTLQIYTTSFAFRSRDFPLGNGKALQFIYSSRPGKTKGGLMSGTATTNVFRNVLFKQAMRALQSQCCSPDEVIFGTDFQQSLYCHLL CGLIFREEIQFVCSTFAHSIVLGFRTLEEVWQELCCDIREGVLSSRVTTPAVRTAMMKLLKPDPELADLIHEKCVGLSNWYGMIPQLFPNVKYVYGIMTG SMEPYLKKLRHYAGDVPLLSADYGSSEGWIGANVNPNLPPESATFAVLPNIGYFEFIPLSKNPDVTPLSLTQVKIGEEYEVVLTNVAGLYRYKLGDVVKV MGFHNSTPELKFVCRRNLLLTINIDKNTEKDLQLAVEEAGKLLAGEKLEVVDFSSQVDSSSDPGHYVIFWEVNGEPREEVLRECCSKLDKSFVDLGYVSS RRVKTIGPLELRVVKRGTFQKILDHYLGLGGAVSQFKTPRCVGPMNKVVLEILCSNVAQTFFSTAYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10005151 [exp]	0	1
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10026543 [exp]	1.0	0.9606
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014082 [exp]	3.2	0.9491
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Lus10024515 [exp]	3.5	0.8998
AT2G30150			UDP-Glycosyltransferase superf...		Lus10042262 [exp]	5.7	0.8814
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10020091 [exp]	8.2	0.8916
AT2G33580			Protein kinase superfamily pro...		Lus10037389 [exp]	11.3	0.8378
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10018841 [exp]	14.7	0.9017
AT2G47130		AtSDR3	short-chain dehydrogenase/redu...		Lus10042181 [exp]	14.8	0.9143
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026178 [exp]	15.2	0.9143
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001274 [exp]	16.4	0.8985

Compare expression of checked genes

Lus10005151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.