Plant FIBer expression Database

Lus10005152 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61660 55 / 1e-10 unknown protein
AT2G46375 40 / 4e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032366
[exp]
49 / 3e-08 AT3G61660 61 / 1e-12 unknown protein
Lus10033949
[exp]
44 / 3e-06 AT3G61660 59 / 5e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G095600
[exp]
55 / 2e-10 AT3G61660 65 / 5e-14 unknown protein
Potri.002G168300
[exp]
54 / 4e-10 AT3G61660 57 / 3e-11 unknown protein
Potri.003G137600
[exp]
47 / 6e-08 AT3G61660 57 / 1e-11 unknown protein
Potri.001G094000
[exp]
45 / 5e-07 AT3G61660 55 / 1e-10 unknown protein
PFAM info
Representative CDS sequence
>Lus10005152 pacid=23141925 polypeptide=Lus10005152 locus=Lus10005152.g ID=Lus10005152.BGIv1.0 annot-version=v1.0
ATGTGGAAGAAGATCGACGGCGGCGGCGGGGGATCGAAATCCAAGCAAGAAGAGGATAAATGTAAGGGGAAGTGGTGGGATTTGGGGAGTCCACTGTACG
ATTCACACGAGCTGGTGTCGATAAGTCATCTCATCGAACGGCATCTGATGGCTCTCCCTGGTTCATTCGGATCCTTGTCGAAACGGCGCAGCAGGAAGTT
TAGCTCTGGCGTCGACGGAGGCCGCCGTCTGATCGTGACTAGTGGTAGTAACGGCGGAAACGGAAGCGTGACGGAGCGGATGAAGAAGAGTGTGGTTAAT
AAGAAGAGGAAACCAGGGGCTGCTTCTCATTCATCATCCCTTGTGGTGGGTTCGGCCGGTTGA
AA sequence
>Lus10005152 pacid=23141925 polypeptide=Lus10005152 locus=Lus10005152.g ID=Lus10005152.BGIv1.0 annot-version=v1.0
MWKKIDGGGGGSKSKQEEDKCKGKWWDLGSPLYDSHELVSISHLIERHLMALPGSFGSLSKRRSRKFSSGVDGGRRLIVTSGSNGGNGSVTERMKKSVVN
KKRKPGAASHSSSLVVGSAG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G61660 unknown protein Lus10005152
[exp]
0 1
AT4G31970 CYP82C2, JAH1 "cytochrome P450, family 82, s... Lus10010758
[exp]
17.1 0.7487
AT1G79860 ATROPGEF12, ROP... MATERNAL EFFECT EMBRYO ARREST ... Lus10035865
[exp]
18.8 0.7396
AT3G47570 Leucine-rich repeat protein ki... Lus10030636
[exp]
24.7 0.7339
AT1G52820 2-oxoglutarate (2OG) and Fe(II... Lus10016660
[exp]
29.3 0.7318
AT3G47090 Leucine-rich repeat protein ki... Lus10034078
[exp]
31.0 0.7057
AT5G45120 Eukaryotic aspartyl protease f... Lus10040624
[exp]
32.3 0.7085
AT1G33590 Leucine-rich repeat (LRR) fami... Lus10006159
[exp]
33.9 0.6297
Lus10034741
[exp]
50.8 0.6197
AT5G66870 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAI... Lus10025840
[exp]
57.3 0.6859
AT3G03000 EF hand calcium-binding protei... Lus10004539
[exp]
62.6 0.6910

Lus10005152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.