Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61670 481 / 2e-157 Protein of unknown function (DUF3133) (.1) AT2G46380 436 / 2e-140 Protein of unknown function (DUF3133) (.1) AT4G01090 307 / 2e-92 Protein of unknown function (DUF3133) (.1) AT1G01440 301 / 9e-91 Protein of unknown function (DUF3133) (.1) AT2G23460 62 / 2e-09 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 60 / 6e-09 XLG2 extra-large GTP-binding protein 2 (.1) AT5G05190 58 / 3e-08 Protein of unknown function (DUF3133) (.1) AT1G31930 57 / 4e-08 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT3G56410 57 / 8e-08 Protein of unknown function (DUF3133) (.1), Protein of unknown function (DUF3133) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003040 [exp] 1631 / 0 AT3G61670 484 / 1e-158 Protein of unknown function (DUF3133) (.1) Lus10003905 [exp] 279 / 1e-81 AT2G46380 271 / 8e-80 Protein of unknown function (DUF3133) (.1) Lus10001910 [exp] 270 / 6e-79 AT1G01440 275 / 5e-82 Protein of unknown function (DUF3133) (.1) Lus10019655 [exp] 58 / 3e-08 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10000743 [exp] 56 / 9e-08 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1) Lus10030508 [exp] 56 / 1e-07 AT5G05190 114 / 4e-26 Protein of unknown function (DUF3133) (.1) Lus10012863 [exp] 54 / 8e-07 AT5G05190 110 / 9e-25 Protein of unknown function (DUF3133) (.1) Lus10034250 [exp] 52 / 2e-06 AT5G05190 68 / 4e-12 Protein of unknown function (DUF3133) (.1) Lus10012124 [exp] 51 / 4e-06 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G095700 [exp] 892 / 0 AT3G61670 559 / 0.0 Protein of unknown function (DUF3133) (.1) Potri.001G093900 [exp] 509 / 2e-166 AT3G61670 370 / 2e-114 Protein of unknown function (DUF3133) (.1) Potri.003G137700 [exp] 461 / 4e-148 AT3G61670 335 / 1e-101 Protein of unknown function (DUF3133) (.1) Potri.005G131200 [exp] 64 / 4e-10 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.007G035200 [exp] 62 / 1e-09 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.001G135300 [exp] 56 / 1e-07 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 54 / 5e-07 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.019G061400 [exp] 52 / 3e-06 AT5G05190 107 / 2e-23 Protein of unknown function (DUF3133) (.1) Potri.004G148300 [exp] 49 / 2e-05 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.012G042500 [exp] 48 / 3e-05 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF11331 [flax] [poplar] zinc_ribbon_12 Probable zinc-ribbon domain
Representative CDS sequence Show only first row Show all	>Lus10005153 pacid=23141918 polypeptide=Lus10005153 locus=Lus10005153.g ID=Lus10005153.BGIv1.0 annot-version=v1.0 ATGGCGGAACCGACGAATGTGAGGCTAGTACGCTGCCCGAACTGCAAAAACCTTCTGCCGGAGCTCGCTAATTACTCCGTTTACCGTTGCGGTGGATGTC GCGCCGTTCTCCGAGCGAAAAATGAAGGCGAGGAGTTGAGAGAAGCGCAATCAGAGAAATCCACTGAAGAAAGGGTTTCCGGAACTGGGAGTACCAGTAG CTTGCAGAACTCTGCAGAGAAGCAGCATGAGGATGTGAGTGAGGATGCCTCCGAAATCGATGTCCAGTCCGACTCTTCTAAATGCAAAGAGAAGGGGCCT GGCATTGTCTGTGATGATGGTGGATGCCAGGGCGAGGGCTCTAAGCCCTTGAGTGGTAAATTGGTTGTTGACGATGGTCTCAGTGTGGAGTTGGACAAAT GTGGTATGGTTGATGAAGTTGGAGGAGAGCATGGTGATCTGAATTCAGGAATTCGGAAATCCGGAAGGATGTCTGGAAGGAGTCAACGACCAGAGAGAGA TGAAGCAGAGGGGTTTCGGAGGAGCATGAAAACTGTGGTTGAAGAAGGTGTACGGTTTTCTACTTCGAAACATCCAGGTGAGGGTCCATCCAGTTATGGT TATGGTTATGGGGAACCGTTGAGGATCCGTGACGAAGAAGTTGAAGCAAATAGAGCTCAGTACCTTGAGAAAGATAGGGCAGAACTTCTGAGGAAGCTGG ATGAGCTGAAGGAGCAACTAAGCAGGTCTTGTGAAGTCGGTGACAAACCAAAGGAAAAGGTTCCTCTTGGTGGGAGAGTGGTTCATCCAGATCCTTATGG TGGTTCTTCAGATGCTTGGTTTCCTGGTGGTTCCTCAGCAGCTGATAAGTATTCAATGGGGTTAAATGCTTCAGATAAACACACTAGGTCCTCTTCCTAT GTCAGCCATCATCCGGAGCCTTTTCCTTACAATAGAGGCCGTGACATGAATATGCACAACTTTGATCCTTCAATTAACACCTCCCGTCATCTTCCTGCTT ATGAATATCCATATGGCTCCCAGATGATGAAGAGACCTCAGCAGTTCCCGGGTCATTACACACATGGATCTCGTCAGTATTTTTCTGGACATTACTTTGA TGGTAATCCTGATGTTTTCGAGCCATACCAACCTAATGCACCTTTGGATCTCCCTCCATGTTCTTGTCTCCATTGCTACGATAAACATCAAGGAAATCCG CCTCCAGTTCCACCCACTCAACGTTACCATGACATTTCAAAAGATTCCATGTTCTACCACCAAGAAAATCCTGGGATGTTTGGTACAAATCCTCGTAATT CCAGAACTAATGTTGCTTCATTCAATAACCGTGGTCTCCATTCCCATGCGAGGTGGCCAAGTCGTCCTCATAGAGTGGTCTTAGCTAGTGGCCACCAATG TCGTCGTCCTGTAGCTGGCGGGGCACCTTTTTTTACTTGTTCCAATTGCTCTGAACTGTTGCAACTTCCCAAGAGAATACTGTCTATGGCCAAAAATCAG CCGAAGATTCGGTGTGGTTCCTGTTCAGCAGTTATTGATCTGGCTTTTGTGAACCAGAAGCTTGTCCTTTCTGCTAGGACTAATGGGAAACAAGCATCTC CTTTGGCCGATGATAGCTCAACTGAGTTTGTGAAACACAATGCTTCTTATTCACACCATCGGATGAACCATATGAATGTTGGTTTCTCATCAGATGATTA TGATACTTCTGGTTTTGACTTCCAAACAGTTGATACTGATCTCCACCCGACGGCATCGTCCATGGGCCAGCCGGTGAAGTCAAGCAGGCCTGAGGAGATG CGGAGCCTCCCGTCCTCTTCTCCAACCTCGTCGGAGTGTGAAGATAGCCCGGACCTTGTTCAACAACCAATAAAGTCTACTCTTGCTGCATCGCTGGCCG ATTCACCACTTCATCAGCAATTTGATTACTCTTCCAATAACCATGCTGTTAATAGACTGGGGAAGGGAAATCGAAGTAGTCGTTCAGATCAAGAAAAGGT GACGAACAGAACTACCACTCGTCAGAATTCTATGAAAGAGGCGTCTTTGGCTTCTGAGATGGATGTTTCATTCAATGATTATGGCAATGGTGAGAATTTC CAGGACCATGGGGATGATGCTGGTAGAGAAGACAATCAGTTGAAAACAGGCAAAGGGAATGAATCATTTCTTGCAAACATCATCAAGAAGAGCTTTAAGG TTACTAAATCTAATCAAGTAGACTCACGCGATAAAAGCAGTGTTTTCGTAAATGGCCATCCCGTACCAGATCGAGTGGTTCGAAAGGCTGAGAAGGTTGC TGGACAAATTCATCCTGGACAATATTGGTATGATTTTCGTGCTGGATTTTGGGGAGTCATGGGAGGACCTTGTGTTGGTATCATACCGCCATTTATCGAA GAACTGAATTATCCCATCCCTGAGAACTGCGCTGGTGGGAATACGGGTGTGTATGTGAATGGAAGAGAACTTCACCAACAGGATCTTGATTTACTCTCCA CTAGAGGGCTCCCAACTGAGAGGGACAGATCATACATAATCGAAATCTCCGGTAGAGTTCTCGATGAAGATACTGGGGAAGAGCTAGACAGCTTAGGCAA ACTCGCTCCGACAATCGAAAGGGTGAAGCGTGGATTCGGGATGAAAGCTCCGAAAGCTGTCGCCTAA
AA sequence Show only first row Show all	>Lus10005153 pacid=23141918 polypeptide=Lus10005153 locus=Lus10005153.g ID=Lus10005153.BGIv1.0 annot-version=v1.0 MAEPTNVRLVRCPNCKNLLPELANYSVYRCGGCRAVLRAKNEGEELREAQSEKSTEERVSGTGSTSSLQNSAEKQHEDVSEDASEIDVQSDSSKCKEKGP GIVCDDGGCQGEGSKPLSGKLVVDDGLSVELDKCGMVDEVGGEHGDLNSGIRKSGRMSGRSQRPERDEAEGFRRSMKTVVEEGVRFSTSKHPGEGPSSYG YGYGEPLRIRDEEVEANRAQYLEKDRAELLRKLDELKEQLSRSCEVGDKPKEKVPLGGRVVHPDPYGGSSDAWFPGGSSAADKYSMGLNASDKHTRSSSY VSHHPEPFPYNRGRDMNMHNFDPSINTSRHLPAYEYPYGSQMMKRPQQFPGHYTHGSRQYFSGHYFDGNPDVFEPYQPNAPLDLPPCSCLHCYDKHQGNP PPVPPTQRYHDISKDSMFYHQENPGMFGTNPRNSRTNVASFNNRGLHSHARWPSRPHRVVLASGHQCRRPVAGGAPFFTCSNCSELLQLPKRILSMAKNQ PKIRCGSCSAVIDLAFVNQKLVLSARTNGKQASPLADDSSTEFVKHNASYSHHRMNHMNVGFSSDDYDTSGFDFQTVDTDLHPTASSMGQPVKSSRPEEM RSLPSSSPTSSECEDSPDLVQQPIKSTLAASLADSPLHQQFDYSSNNHAVNRLGKGNRSSRSDQEKVTNRTTTRQNSMKEASLASEMDVSFNDYGNGENF QDHGDDAGREDNQLKTGKGNESFLANIIKKSFKVTKSNQVDSRDKSSVFVNGHPVPDRVVRKAEKVAGQIHPGQYWYDFRAGFWGVMGGPCVGIIPPFIE ELNYPIPENCAGGNTGVYVNGRELHQQDLDLLSTRGLPTERDRSYIIEISGRVLDEDTGEELDSLGKLAPTIERVKRGFGMKAPKAVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46380			Protein of unknown function (D...		Lus10005153 [exp]	0	1
AT3G61670			Protein of unknown function (D...		Lus10003040 [exp]	1.0	0.9640
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10039386 [exp]	2.0	0.9123
					Lus10039387 [exp]	5.9	0.8983
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10035614 [exp]	7.7	0.8795
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10025108 [exp]	10.3	0.8354
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10020787 [exp]	10.7	0.8673
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10036794 [exp]	12.6	0.8574
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10014915 [exp]	14.3	0.8984
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	16.2	0.8914
AT1G77500			Protein of unknown function (D...		Lus10042723 [exp]	17.7	0.8485

Compare expression of checked genes

Lus10005153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.