Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55390 208 / 2e-68 Uncharacterised protein family (UPF0497) (.1) AT1G79780 59 / 5e-11 Uncharacterised protein family (UPF0497) (.1) AT1G17200 54 / 7e-09 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT2G38480 52 / 2e-08 Uncharacterised protein family (UPF0497) (.1) AT3G16300 51 / 9e-08 Uncharacterised protein family (UPF0497) (.1) AT4G16442 48 / 6e-07 Uncharacterised protein family (UPF0497) (.1) AT5G40300 47 / 2e-06 Uncharacterised protein family (UPF0497) (.1) AT2G36330 47 / 3e-06 Uncharacterised protein family (UPF0497) (.1) AT5G62820 46 / 5e-06 Uncharacterised protein family (UPF0497) (.1) AT4G25830 43 / 4e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001709 [exp] 319 / 4e-112 AT3G55390 231 / 1e-77 Uncharacterised protein family (UPF0497) (.1) Lus10026196 [exp] 60 / 5e-11 AT1G17200 241 / 1e-81 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10042471 [exp] 60 / 6e-11 AT1G17200 242 / 6e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10038271 [exp] 54 / 1e-08 AT3G16300 158 / 2e-48 Uncharacterised protein family (UPF0497) (.1) Lus10025833 [exp] 52 / 4e-08 AT3G16300 153 / 1e-46 Uncharacterised protein family (UPF0497) (.1) Lus10012216 [exp] 47 / 2e-06 AT2G38480 170 / 2e-53 Uncharacterised protein family (UPF0497) (.1) Lus10001266 [exp] 47 / 3e-06 AT2G38480 168 / 8e-53 Uncharacterised protein family (UPF0497) (.1) Lus10031303 [exp] 42 / 9e-05 AT2G39530 87 / 2e-21 Uncharacterised protein family (UPF0497) (.1) Lus10014537 [exp] 40 / 0.0007 AT3G16180 174 / 4e-49 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207000 [exp] 233 / 1e-78 AT3G55390 243 / 8e-83 Uncharacterised protein family (UPF0497) (.1) Potri.008G053500 [exp] 226 / 9e-76 AT3G55390 238 / 6e-81 Uncharacterised protein family (UPF0497) (.1) Potri.001G436400 [exp] 63 / 6e-12 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.011G140200 [exp] 62 / 1e-11 AT1G17200 223 / 3e-74 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.003G050400 [exp] 59 / 2e-10 AT3G16300 137 / 2e-40 Uncharacterised protein family (UPF0497) (.1) Potri.016G128200 [exp] 52 / 2e-08 AT2G38480 164 / 2e-51 Uncharacterised protein family (UPF0497) (.1) Potri.016G008800 [exp] 51 / 6e-08 AT2G35760 253 / 2e-86 Uncharacterised protein family (UPF0497) (.1) Potri.001G188000 [exp] 44 / 2e-05 AT3G16300 131 / 5e-38 Uncharacterised protein family (UPF0497) (.1) Potri.006G016900 [exp] 43 / 3e-05 AT2G35760 250 / 4e-85 Uncharacterised protein family (UPF0497) (.1) Potri.001G102600 [exp] 42 / 0.0001 AT4G11655 105 / 2e-28 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10005154 pacid=23141910 polypeptide=Lus10005154 locus=Lus10005154.g ID=Lus10005154.BGIv1.0 annot-version=v1.0 ATGTCGTCGCCTCAGCCTCTTCGAGGCAGCAACGGGGAGACGCCCTCCCCCCACCACCACCACCATCGGACACCCTCTCCCCACCATCGAATTTCCGCCC CTCACTTCCACTCCAACACCTCCGTACACAGGCTCCGACGATTCAACTCCCTCATTCTCCTCCTCCGCCTCATCGCCTTCTGCTTCTCCCTCACTTCCGC CGTCTTCATGCTCACCAACTCCCGCGGCTCCGATTCCCCTTCCTGGCACGACTTCGATGCCTTTCGATACGTACTGGCTGCGAACGCAATCGTGGCGATA TACTCCATCTTCGAAGTGGCGGCGTCGGCGTGGGAAGTTATCAAGAGTGTGACGCTGTTCCCGGAGGTGCTGCAAGTGTGGTTCGATTTCGGCCACGACC AGATATTCGCCTACCTTGTGCTCTCTGCCAACTCCGCAGCTACTGGGATGGCCAAGTCGCTGAGAGAAGGTGACACTTGCAGATCGTTCAGCGCATTCTG CCTCCAATCGGACATCTCCATTGCGCTTGGGTTCGTGGGGTTCCTGTTCCTAGGTTTTACCTGCTTGATTTCGGGTTATCGGGTCGTCTGTTTTCTAATC AACGGCTCCCGTTTCCACCTCTAA
AA sequence Show only first row Show all	>Lus10005154 pacid=23141910 polypeptide=Lus10005154 locus=Lus10005154.g ID=Lus10005154.BGIv1.0 annot-version=v1.0 MSSPQPLRGSNGETPSPHHHHHRTPSPHHRISAPHFHSNTSVHRLRRFNSLILLLRLIAFCFSLTSAVFMLTNSRGSDSPSWHDFDAFRYVLAANAIVAI YSIFEVAASAWEVIKSVTLFPEVLQVWFDFGHDQIFAYLVLSANSAATGMAKSLREGDTCRSFSAFCLQSDISIALGFVGFLFLGFTCLISGYRVVCFLI NGSRFHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55390			Uncharacterised protein family...		Lus10005154 [exp]	0	1
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10019825 [exp]	4.8	0.7424
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10036914 [exp]	17.5	0.7390
AT1G51940			protein kinase family protein ...		Lus10004625 [exp]	18.2	0.6866
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005663 [exp]	19.6	0.6752
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Lus10028189 [exp]	22.8	0.7134
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	23.2	0.7311
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10022789 [exp]	23.9	0.6979
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	27.1	0.7357
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10018739 [exp]	28.2	0.7198
					Lus10037765 [exp]	32.9	0.7165

Compare expression of checked genes

Lus10005154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.