Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55400 881 / 0 OVA1 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) AT4G13780 139 / 3e-34 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) AT4G33355 99 / 2e-24 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT5G59310 77 / 1e-16 LTP4 lipid transfer protein 4 (.1) AT2G18370 75 / 4e-16 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G15050 72 / 4e-15 LTP7, LTP lipid transfer protein 7, lipid transfer protein (.1.2.3) AT5G59320 72 / 5e-15 LTP3 lipid transfer protein 3 (.1) AT3G51590 64 / 3e-12 LTP12 lipid transfer protein 12 (.1) AT2G38540 62 / 2e-11 ATLTP1, LP1 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) AT3G51600 60 / 9e-11 LTP5 lipid transfer protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001704 [exp] 974 / 0 AT3G55400 891 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Lus10001703 [exp] 195 / 2e-59 AT4G33355 86 / 9e-23 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10001706 [exp] 169 / 1e-49 AT3G55400 119 / 3e-32 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Lus10029445 [exp] 139 / 1e-38 AT4G33355 103 / 2e-29 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10040917 [exp] 147 / 3e-36 AT4G01030 898 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009813 [exp] 135 / 1e-32 AT4G01030 820 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10010450 [exp] 129 / 6e-31 AT4G13780 937 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10022571 [exp] 127 / 3e-30 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10016658 [exp] 126 / 9e-30 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207300 [exp] 894 / 0 AT3G55400 935 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Potri.017G057700 [exp] 135 / 7e-33 AT4G13780 1255 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.001G317500 [exp] 130 / 4e-31 AT4G13780 1260 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.014G046500 [exp] 108 / 6e-28 AT4G33355 76 / 6e-19 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.004G086500 [exp] 70 / 3e-14 AT2G38540 124 / 5e-38 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Potri.004G086600 [exp] 68 / 1e-13 AT2G38540 122 / 3e-37 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Potri.016G135700 [exp] 67 / 3e-13 AT5G59310 92 / 3e-25 lipid transfer protein 4 (.1) Potri.016G136000 [exp] 66 / 5e-13 AT5G01870 113 / 1e-33 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.016G135800 [exp] 64 / 5e-12 AT5G01870 111 / 1e-32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G232700 [exp] 63 / 8e-12 AT2G18370 93 / 1e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family CL0039 [flax] [poplar] HUP PF09334 [flax] [poplar] tRNA-synt_1g tRNA synthetases class I (M)
Representative CDS sequence Show only first row Show all	>Lus10005156 pacid=23141911 polypeptide=Lus10005156 locus=Lus10005156.g ID=Lus10005156.BGIv1.0 annot-version=v1.0 ATGTTGGTTGTCATTGCAATGATCCAATTCATTGTTAAGCCAGGGGATGCTGCTGCCATACGTTGTGGCCAAGTGGACTCGTACTTGGCACCTTGCATTC CCTACTTGACCTCAGGGAACGGAGATCCGGCCCCAAAATGCTGCGAGGGAATCCAGAGCTTGAAGGCCAACACTCCCACCGTTGATGATCGGAGAGCAGC GTCTGCCTGTGTTAAAGACGCCGCCAACCGCTACCCGGTGAAGGATGTTGCTGCTTCCTCCCTCCCTACCAAATGTGGTGTTTCTATCGGCATCCCTATC TCCAAGGCTATCAACTGGCAGACCAGAGCCCTTTTCTGCAGTTGCACAGCCGTCGATTCCCAAAGGAATGTAGAAGCAGCTGAGACATTTGTGCTCACTA CCCCTCTCTACTACGTAAATGCCGCTCCTCACATGGGTAGCGCTTACACAACCATTGCTGCTGATGCTATTGCCCGCTTTCAGAGGCTTTTAGGGAAGAA GGTCATACTAGTCACTGGCACTGATGAGCATGGGGAGAAAATTGCTACAGCTGCTGCTGCCTGTGCTGCTACCCCAACTGAGCATTGCGACATTGTATCT CAAGCTTACAAAAGCTTGTGGAAAGATTTGGACATTTCATACAACAAGTTCATTCGAACTACTGATCTCAAGCATGAAGCAATCGTCAAAGAGTTCTATT CTAGGGTACTTGCTAATGGTGACATTTACCATGCTGACTACGAGGGACTCTACTGTGTCAACTGCGAGGAGTATAAGGATGAGAAGGAACTACTTGAGAA CAAATGCTGCCCTGTCCACTTAAAACCATGTATAGAGCGCAAAGAGGAAAATTACTTCTTTGCTTTGTCTAAGTACCAACAGAAATTGGAAGAAACTTTA TCCTCGAATCCAAATTTTGTACAGCCTTCATATCGTTTGAATGAGGTGCAAAGTTGGATCAAAAGTGGCTTGAAAGACTTCTCAATTTCTCGAGCATCTG TGGAGTGGGGAATTCCAGTTCCCAATGACCAAAGACAAACAATATATGTCTGGTTTGATGCTTTACTTGGTTACATATCAGCTCTTGCAGAGGATAATGG ACACTCTAATTTACAGGATGCTGTTTCGGCTGGTTGGCCTGCGTCACTGCATTTGATTGGCAAGGATATTTTGCGTTTTCATGCAGTTTACTGGCCTGCA ATGCTTATGTCTGCCGGTCTTGATCTTCCAAAAATGGTGTTTGGGCATGGGTTTTTGACTAAGGACGGCATGAAGATGGGGAAGTCATTGGGAAATACAC TCGAACCGAATGAATTGGTTCAAAGATTTGGGTCTGATGCTGTCAGGTACTTCTTCCTTAGAGAAGTTGAATTCGGTAACGATGGGGATTATTCAGAAGA TCGTTTCATTAATATTGTGAACGCACATCTCGCCAATACCATAGGAAACCTCCTTAACCGTACTCTTGGACTTCTCAGAAAGAATTGCCAATCAACTTTA GTAATGGATTCATATACTGCAGCTGAAGGAAGTGCCATAAAAAACACTGTTGAAATTCTGGTTGAGAAAGCTCGGTCAAATTATGAAAACATGTCCCTAT CGACAGCCTGTGAGGCTGTACTTGAGATTGGTAATGCTGGAAATTTGTACATGGATGAACGTGCACCGTGGTCTCTGTTTAAGCAGGGGGGAGTGGCTTC TGAAGCTGCCGCCAAGGATCTTGTAATTATTCTGGAAGCAATGAGGATCATAGCCATTGCGTTATCACCTGTAGCACCACGGTTGAGCTGCAGAATATAT ACACAGCTCGGCTACTCGGAGGACCAATTTGCAACTGTGACATGGGGAGAGACAAAATGGGGTGGGTTGAAAGGTGGTCAAGTGATGGGTCAACCTAGTC CTGTGTTTGCGAGGATTGAGAACCCAGCAGAAGTAGAAGCTGGTTCTTCTGACGCATCAGCAGCAGCTAAGCCGCAGTTGAAAAGCAAGAAGCAAAAGAA GAAACCTCAGCCACAAGTAGCTCCTGAGGCTTAG
AA sequence Show only first row Show all	>Lus10005156 pacid=23141911 polypeptide=Lus10005156 locus=Lus10005156.g ID=Lus10005156.BGIv1.0 annot-version=v1.0 MLVVIAMIQFIVKPGDAAAIRCGQVDSYLAPCIPYLTSGNGDPAPKCCEGIQSLKANTPTVDDRRAASACVKDAANRYPVKDVAASSLPTKCGVSIGIPI SKAINWQTRALFCSCTAVDSQRNVEAAETFVLTTPLYYVNAAPHMGSAYTTIAADAIARFQRLLGKKVILVTGTDEHGEKIATAAAACAATPTEHCDIVS QAYKSLWKDLDISYNKFIRTTDLKHEAIVKEFYSRVLANGDIYHADYEGLYCVNCEEYKDEKELLENKCCPVHLKPCIERKEENYFFALSKYQQKLEETL SSNPNFVQPSYRLNEVQSWIKSGLKDFSISRASVEWGIPVPNDQRQTIYVWFDALLGYISALAEDNGHSNLQDAVSAGWPASLHLIGKDILRFHAVYWPA MLMSAGLDLPKMVFGHGFLTKDGMKMGKSLGNTLEPNELVQRFGSDAVRYFFLREVEFGNDGDYSEDRFINIVNAHLANTIGNLLNRTLGLLRKNCQSTL VMDSYTAAEGSAIKNTVEILVEKARSNYENMSLSTACEAVLEIGNAGNLYMDERAPWSLFKQGGVASEAAAKDLVIILEAMRIIAIALSPVAPRLSCRIY TQLGYSEDQFATVTWGETKWGGLKGGQVMGQPSPVFARIENPAEVEAGSSDASAAAKPQLKSKKQKKKPQPQVAPEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10005156 [exp]	0	1
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Lus10027610 [exp]	1.0	0.9567
AT1G60230			Radical SAM superfamily protei...		Lus10013005 [exp]	1.4	0.9513
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10001187 [exp]	4.9	0.9401
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10014660 [exp]	4.9	0.9408
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	8.1	0.9184
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	8.4	0.9389
AT4G21770			Pseudouridine synthase family ...		Lus10007657 [exp]	10.2	0.9275
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10028562 [exp]	10.4	0.9027
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Lus10029195 [exp]	12.8	0.9209
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10041094 [exp]	13.2	0.9329

Compare expression of checked genes

Lus10005156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.