Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65520 115 / 6e-33 PEC11, ECHIC, ATECI1 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) AT4G14440 104 / 9e-29 HCD1, ATECI3 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) AT4G14430 94 / 9e-25 PEC12, IBR10, ECHIB, ATECI2 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001701 [exp] 169 / 8e-54 AT1G65520 270 / 5e-92 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Lus10005159 [exp] 108 / 4e-30 AT1G65520 279 / 4e-95 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Lus10041153 [exp] 93 / 4e-24 AT4G14440 306 / 4e-106 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) Lus10041154 [exp] 87 / 7e-22 AT4G14440 306 / 5e-106 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) Lus10022199 [exp] 87 / 1e-21 AT4G14430 310 / 2e-107 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Lus10021207 [exp] 84 / 8e-21 AT4G14430 303 / 1e-104 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207800 [exp] 139 / 4e-42 AT1G65520 276 / 3e-94 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Potri.008G164900 [exp] 97 / 1e-25 AT4G14430 280 / 1e-95 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Potri.010G073700 [exp] 93 / 3e-24 AT4G14430 293 / 5e-101 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Potri.008G052801 [exp] 83 / 3e-21 AT1G65520 140 / 3e-42 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10005158 pacid=23141903 polypeptide=Lus10005158 locus=Lus10005158.g ID=Lus10005158.BGIv1.0 annot-version=v1.0 ATGCCGACGATCGCAGCAATCGCCGGCCACGCATCCGCCGCTGGGATGATCTTAGCCTTGAGCCATGACTATGTTGTGATGAGGAAGGACAGAGGGTTTC TTTACATGAGCGAGGTCGATATCGGACTTGTCATACCTGATTTGTTCGTGACTCTACTGAACATCAAGATTGGGAGTGGGAGCGTCCGGCGGGAGGTTAT TATGTCGGCAGCCAAGCTTACGGCGGAGATGGCGGTGGAGACAGGGATTGTTCACTCTGTTTATCATGGTGCTGAAGCCACTGTTGAAGGTGCGATTAGG CTGGGGGAGGAGCTTTTAAGCGGAGGTGGAATGGCCAAGTTTATGCCAAGAATAGGATGGTGGTTTTGA
AA sequence Show only first row Show all	>Lus10005158 pacid=23141903 polypeptide=Lus10005158 locus=Lus10005158.g ID=Lus10005158.BGIv1.0 annot-version=v1.0 MPTIAAIAGHASAAGMILALSHDYVVMRKDRGFLYMSEVDIGLVIPDLFVTLLNIKIGSGSVRREVIMSAAKLTAEMAVETGIVHSVYHGAEATVEGAIR LGEELLSGGGMAKFMPRIGWWF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	0	1
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	2.2	0.9675
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10025741 [exp]	2.6	0.9517
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042316 [exp]	3.2	0.9556
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	3.9	0.9581
AT2G17705			unknown protein		Lus10025950 [exp]	3.9	0.9461
AT5G09680		RLF	reduced lateral root formation...		Lus10039342 [exp]	4.0	0.9513
AT5G45230			Disease resistance protein (TI...		Lus10012247 [exp]	4.2	0.9541
AT3G56770	bHLH	bHLH107	basic helix-loop-helix (bHLH) ...		Lus10038306 [exp]	5.1	0.9345
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	5.7	0.9591
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031146 [exp]	6.3	0.9557

Compare expression of checked genes

Lus10005158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.