Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65520 234 / 2e-77 PEC11, ECHIC, ATECI1 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) AT4G14440 201 / 2e-64 HCD1, ATECI3 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) AT4G14430 194 / 1e-61 PEC12, IBR10, ECHIB, ATECI2 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001701 [exp] 269 / 4e-91 AT1G65520 270 / 5e-92 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Lus10041153 [exp] 211 / 4e-68 AT4G14440 306 / 4e-106 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) Lus10022199 [exp] 199 / 7e-64 AT4G14430 310 / 2e-107 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Lus10041154 [exp] 199 / 1e-63 AT4G14440 306 / 5e-106 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 3, 3-hydroxyacyl-CoA dehydratase 1 (.1) Lus10021207 [exp] 197 / 1e-62 AT4G14430 303 / 1e-104 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Lus10005158 [exp] 107 / 3e-29 AT1G65520 140 / 1e-42 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207800 [exp] 282 / 2e-96 AT1G65520 276 / 3e-94 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1) Potri.010G073700 [exp] 207 / 8e-67 AT4G14430 293 / 5e-101 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Potri.008G164900 [exp] 199 / 8e-64 AT4G14430 280 / 1e-95 DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, ENOYL-COA HYDRATASE/ISOMERASE B, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 2, indole-3-butyric acid response 10 (.1) Potri.008G052801 [exp] 110 / 2e-30 AT1G65520 140 / 3e-42 "delta\(3\), delta\(2\)-enoyl CoA isomerase 1", ENOYL-COA HYDRATASE/ISOMERASE C, ARABIDOPSIS THALIANA DELTA\(3\), DELTA\(2\)-ENOYL COA ISOMERASE 1, delta(3), delta(2)-enoyl CoA isomerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10005159 pacid=23141928 polypeptide=Lus10005159 locus=Lus10005159.g ID=Lus10005159.BGIv1.0 annot-version=v1.0 ATGTGCACGTTGGAGAAGCGAGGCAACATTTTCATCTTAACGTTGACCGGCTCCAACGAACACCGGCTGAACCCCAATCTCCTAGATTCGATTCAATCTG CCCTCCGCCAGCTTCGTGCCCAGCCGGCCAAGCCTTCTTCTGTTCTCATCACCACCGCCCAGGGGAAGTTCTTCTCCAATGGTTACGATCTCGATTGGGC GCAATCCGCCGCCGCCGCCGCCTCCTCATCGTCCACTCCGGGCCAATCTCCCTACCAGCTTATGTCGTCCAAGCTCCGCTCCGTGATCGCCGAACTCATC AGCCTCCCTATGCCGACAATCGCTGCTGTGACGGGGCACGCGGCGGCGGCAGGGGTTATCCTCGCTCTGAGCCACGACTACGTCCTGATGCGGAGGGACC GAGGGTTCATCTACATGAGCGAGGTGGACATCGGGCTGGTGGTCCCGGCTTGGTTCATGGCAGTGCTCAATTGCAAGATCGGAGACGCGGGGGCGCGGAG GGATATGGTACTGCGAGCAGCTAAGTTCACGGCGACTACGGCGGCAGAGAAGGGAATAGTGAATTCGGCGCACGATAGCGCTGAGGGGACGGTGGAGGCG GCGATGAGATTGGGGGATGAGCTGGCGAGGAGGAGGTGGGATGGACACGCGTACGCCAGCAATAGGATGGTGGTCTTAGCTGAGGTGTTGGAAAAAATTA GGGGGCACGACGAAACTGTAGATGGGCAAAATTGTCATATGCGTAATAAGGCAAATTTGTGA
AA sequence Show only first row Show all	>Lus10005159 pacid=23141928 polypeptide=Lus10005159 locus=Lus10005159.g ID=Lus10005159.BGIv1.0 annot-version=v1.0 MCTLEKRGNIFILTLTGSNEHRLNPNLLDSIQSALRQLRAQPAKPSSVLITTAQGKFFSNGYDLDWAQSAAAAASSSSTPGQSPYQLMSSKLRSVIAELI SLPMPTIAAVTGHAAAAGVILALSHDYVLMRRDRGFIYMSEVDIGLVVPAWFMAVLNCKIGDAGARRDMVLRAAKFTATTAAEKGIVNSAHDSAEGTVEA AMRLGDELARRRWDGHAYASNRMVVLAEVLEKIRGHDETVDGQNCHMRNKANL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005159 [exp]	0	1
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Lus10004607 [exp]	8.7	0.8382
AT4G12710			ARM repeat superfamily protein...		Lus10041090 [exp]	12.0	0.8199
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	12.3	0.8460
AT1G17070			GC-rich sequence DNA-binding f...		Lus10000930 [exp]	12.5	0.8412
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Lus10043106 [exp]	19.7	0.8065
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10033061 [exp]	20.9	0.7986
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Lus10015479 [exp]	25.8	0.7918
AT1G31870			unknown protein		Lus10033140 [exp]	29.2	0.8248
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10012593 [exp]	32.2	0.8302
AT1G78310			VQ motif-containing protein (....		Lus10036479 [exp]	34.5	0.7725

Compare expression of checked genes

Lus10005159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.