Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12590 1409 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001698 [exp] 1376 / 0 AT3G12590 973 / 0.0 unknown protein Lus10001699 [exp] 694 / 0 AT3G12590 453 / 4e-150 unknown protein Lus10001700 [exp] 105 / 9e-27 AT3G12590 47 / 5e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G052700 [exp] 1592 / 0 AT3G12590 1518 / 0.0 unknown protein Potri.010G207900 [exp] 1583 / 0 AT3G12590 1504 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005160 pacid=23141906 polypeptide=Lus10005160 locus=Lus10005160.g ID=Lus10005160.BGIv1.0 annot-version=v1.0 ATGTCTTCGTCGGCCTTCAGTCCGTCGCGGGGCAGTCCGGTCAGCTCCAGGTTACAGAGGGAACAACACTTTGTTCTAATCGGCAGCAACAGGCTGAGAT CCTCTTCGCTTAGGAAGCCGCCGGAGCCTTTGCGGAGAGCAATTGCGGACTGTCTGTCGTCTTCCGCCTCGGCTTCGACGTCTTCTGGTGGTGGCGCGGT CACCGTCTTGCACCATGGCAGTCCGTCTGTAGCGCTGAACGAAGCTTCGAGGACTCTACGTGATTATTTAGCATCCCCTGCAACCACTGATCTGGCATAT AGTGTAATTTTGGAACACACAATTGCTGAGAGAGAGCGCAGCCCAGCCGTAGTTGCAAGGTGTGTGGGTCTTTTGAAGCGGCACCTTGTAAGATATAAAC CAAGCGAGGAGACATTACTGCAGATTGATCGATTTTGTGTGAATACGATCTCTGAGTGTGATAACAGCACAAGTCGAAGACCAGCACCATTTTCACAGTC TATGCATCAGCAATCCATTACCTCTGCTGCATCCGCACATAATCTGCCTTCTCTGCCTGTTTCTAGTTTTGCTTCTGGGGCACTTGTAAAGTCATTAAAT TATGTACGTTCACTAGTAGCTCAGCATATTCCAAAGCGGTCATTTCAGCCAGCTGCATTTGCTGGGTCTCCATCTTCATCAAGACAGGCACTTCCTGCGT TGTCTTCATTTTTGCGTAAATCCTTTAACTCCCAATTAAGCCCTGCAAATACTACTGAATCTTCAGACAGCAGAGATGTTGCTGCTTTGCCGGTTTCACA TTTTACAAATATGGAAAAAGCTGATGCGATGGAGGACATTGATCACATTGCATATGATGTTTTAAACTGGCGTTGGGCTGGAGATAATCTGTTTTCAGCA TTGTCCTCTGAAAGTGATCGTGCGTCTGTGCTGGAGGATATGCGTACCCATAGTCTATTAGAATTGGGTGCTGCAGCGCTTCTTGTTGGAGACATGGAAG CGAAGATGAAGGATCAACCTTGGAAATATTTTGGAACTGCTGATATGCCGTATCTTGATCAGCTTTTGCAGCCTTCTCCGATCTCTACAATCACCAATTC AGCCTCTGCTCGTTCACACTTAAGAGCAATAACAGCATCTAAACGCTGTAAAGCAGGACCACCTCAGATCTGGGAAGATTCTCCTTTAGGCACATTCCGA CCACGAGCGAGGCCACTATTCCAATATCGTCATTATAGTGAACAACAACCTTTACGATTAAATCCAGCAGAGGTATGCGAGGTTATTGCTGCAGTTGGCT CAGAGACGTATAGTCCAATGGCCCCACCGACACTGTCATCACGATTAAGTAATAACACTGGCAAGCCATCAATGGATGTGGCAGTGAGCGTACTTATTAA GCTTGTTATTGATATGTATGTGTTGGATTCTGGCACTGCTGCTCCACTGACGTTGTCTATGCTTGAGGAGATGCTTTCATCTCCAAAAGCAGCATGCCGA GTTCGTGCGTTTGATTTAATTTTGAACCTCGGGGTTCATGCTCATTTATTAGAACCAATGATGGTTGGTGATAGTTCCACAATTGAAGAAGAGTACGGAC AAGAGTCCTTGCTTGAGAATCAAGACAAACTTGCAACACCTGATAAGAGGAAAGCAGATTCATTTGAGAAAACAGATCCTTCATCAGCTATTGGCAAGTT CGAGTCCTGGATCTTAAACATATTGTGCGAGACACTTTTGCTTCTTGTCCAGACAGAGGAGCAGGAAGAGTCTATTTGGGCTTCTGCACTAAGTTGTCTG CTGTACTTCGTCTGTGATAGAGGGAAAATTTTGAGAAACCGTCTAGAAGGCCTGGATATAAGGGTTATCAAAGCATTCATAATGACCAGCAGGAGAAATT GCTGGGCTGAATTAGTGCATAGCAAGCTTATTTGCATGTTGACGAACATGTTCTACCAAATTCCAGATGAGCCTGTTGAGACTATTTTGAAGACTCCTGT GTTTCTTAAAGACCAGGTTGACCTGATCGGTGGTATTGAGTTCATTTTCTATGAGTATTCTCTCGCCAATTTGAGGGAGGATAGGAGAAACCTATATTTG GTTCTTTTTGATAATGTTTTGCACCAAATTAATCAAGCATGTGCAACTGCTGGAGTTTCAGAATATAGCAATGATGAGATCCACCCTCTTGCTACTTTGT TTTCTCTTGTTGATGCACCTGAGGCTTTCTATATTTCTGTTAAACTTGGAGTGGAAGGCATAGCGGAGCTTCTGAGAAGATCAATTTCTTCTGCACTGGC TAGATATTCGAATAACGAAAGATTAAATATGCTGTTGGAGAATATAACGGAGACATTTGACCGGATAATCAATTCTTTTACTCGTGTTGACAAGGAGTTC TTCCATCTGATACAAGTAACCAAGTCTCACAAATTTCTAGAAAGCATTAAAAGTGAAAGCCCAAGAAATGGTATTGTCATGAAAGCTAAGCTTTCATGGG CCACACTGCACTCACTTCTTCATTCTGATAGAATTGCGTGCCGTCAGAATGGCTATATCTGGTTAGGTGACTTGCTTATTTCAGAAATTAGTGGGGGGAG AGACGTTAGAATATGGTCCAACATCAACGACTTGCAGCATATAATCACCCATGCTGGTGCAAGTGACGATACGGAAGCTGCTTCAGATGTTCCTTTGTCC ATTTGGCTGATGTGTGGACTTCTGAAATCCAAACACAATGTTATTAGATGGGGATTTCTATTCGTTCTGGATCGATTTCTTGTGCGCTGCAAATCTTTAT TGGATGAGAATGAAATGCAGCATCCTGGTGTTAGTATTGTTACCCGTGGAGATGCTGATAGCCGGCTTGAGAAAGCAAATGCAGTTGTAGACATCATGAG CAGTGCTTTATCCTTGGTCGCCCAAATTAATGAAACTGACCGCTTTAATATTTTGAAGATGTGCGAAATTTTGTTCTCTCAATTATGCCTGAAAGTTCAC CCGCTGTCTGCTATGCCATATGGAGAACGGGTACGTCGTGATATTGTTCATGTTGGCATGGATAAAACTGAAAGAGTCGATTCAGATGATCACATCTCTC AGTTGGAGAATCACTCGACGGATATTTCGGATGAAAGAGATATTAAATTCAGTTGCAGTGGCAATTCAATGATGCATGAAATGGCGTCAATGGCTGCAAT GCTTCTCCAAGGGAAGGCTATAGTTCCTATGCAATTGGTCGCACGGGTTCCTGCTGCTTTATTTTATTGGCCATTGATTCAACTAGCTGGTGCAGCTACA GATGATATAGCTCTGGGTGTTGCAGTTGGAAGCAAGGGAAGGGGAAACCTTCCTGGCGCTGCATCCGACATTAGAGCCACACTTCTATTACTTCTTATTG GAAAATGCACAGTCGATCCTTCTGCCTTTGAAGAAGTTGGCGGTGAAGAATTTTTCAGGGAACTTTTGGATGATACGGATTCGAGGGTAGCATATTACTC TTCAGCATTTCTCTTGAAGAGAATGATGACGGAGAAACCAGACGAATACCAGCACATGCTTCAAAATCTTATATTTAAAGCCCAACAGAGCAACAATGAA AAGTTGTTGGAAAACCCCTACTTGCAGATGCGTGGCATACTTCAGCTGTCAAATTATGGGCTAATCTAA
AA sequence Show only first row Show all	>Lus10005160 pacid=23141906 polypeptide=Lus10005160 locus=Lus10005160.g ID=Lus10005160.BGIv1.0 annot-version=v1.0 MSSSAFSPSRGSPVSSRLQREQHFVLIGSNRLRSSSLRKPPEPLRRAIADCLSSSASASTSSGGGAVTVLHHGSPSVALNEASRTLRDYLASPATTDLAY SVILEHTIAERERSPAVVARCVGLLKRHLVRYKPSEETLLQIDRFCVNTISECDNSTSRRPAPFSQSMHQQSITSAASAHNLPSLPVSSFASGALVKSLN YVRSLVAQHIPKRSFQPAAFAGSPSSSRQALPALSSFLRKSFNSQLSPANTTESSDSRDVAALPVSHFTNMEKADAMEDIDHIAYDVLNWRWAGDNLFSA LSSESDRASVLEDMRTHSLLELGAAALLVGDMEAKMKDQPWKYFGTADMPYLDQLLQPSPISTITNSASARSHLRAITASKRCKAGPPQIWEDSPLGTFR PRARPLFQYRHYSEQQPLRLNPAEVCEVIAAVGSETYSPMAPPTLSSRLSNNTGKPSMDVAVSVLIKLVIDMYVLDSGTAAPLTLSMLEEMLSSPKAACR VRAFDLILNLGVHAHLLEPMMVGDSSTIEEEYGQESLLENQDKLATPDKRKADSFEKTDPSSAIGKFESWILNILCETLLLLVQTEEQEESIWASALSCL LYFVCDRGKILRNRLEGLDIRVIKAFIMTSRRNCWAELVHSKLICMLTNMFYQIPDEPVETILKTPVFLKDQVDLIGGIEFIFYEYSLANLREDRRNLYL VLFDNVLHQINQACATAGVSEYSNDEIHPLATLFSLVDAPEAFYISVKLGVEGIAELLRRSISSALARYSNNERLNMLLENITETFDRIINSFTRVDKEF FHLIQVTKSHKFLESIKSESPRNGIVMKAKLSWATLHSLLHSDRIACRQNGYIWLGDLLISEISGGRDVRIWSNINDLQHIITHAGASDDTEAASDVPLS IWLMCGLLKSKHNVIRWGFLFVLDRFLVRCKSLLDENEMQHPGVSIVTRGDADSRLEKANAVVDIMSSALSLVAQINETDRFNILKMCEILFSQLCLKVH PLSAMPYGERVRRDIVHVGMDKTERVDSDDHISQLENHSTDISDERDIKFSCSGNSMMHEMASMAAMLLQGKAIVPMQLVARVPAALFYWPLIQLAGAAT DDIALGVAVGSKGRGNLPGAASDIRATLLLLLIGKCTVDPSAFEEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEKPDEYQHMLQNLIFKAQQSNNE KLLENPYLQMRGILQLSNYGLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12590			unknown protein		Lus10005160 [exp]	0	1
AT3G12590			unknown protein		Lus10001699 [exp]	1.4	0.9706
AT5G27970			ARM repeat superfamily protein...		Lus10004116 [exp]	6.0	0.9542
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039854 [exp]	7.3	0.9436
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035941 [exp]	7.5	0.9524
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040531 [exp]	11.2	0.9443
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024135 [exp]	11.5	0.9379
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016684 [exp]	13.5	0.9145
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017747 [exp]	13.6	0.9395
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024283 [exp]	13.7	0.9472
AT2G07360			SH3 domain-containing protein ...		Lus10027587 [exp]	16.2	0.9392

Compare expression of checked genes

Lus10005160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.