Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55460 517 / 0 C2H2ZnF DNA/RNA-binding protein Kin17, conserved region (.1) AT5G51795 327 / 3e-110 DNA/RNA-binding protein Kin17, conserved region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001697 [exp] 516 / 0 AT1G55460 408 / 3e-142 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10012271 [exp] 168 / 1e-51 AT1G55460 152 / 4e-46 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10001696 [exp] 152 / 2e-45 AT1G55460 137 / 1e-40 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10012272 [exp] 64 / 7e-13 AT1G55460 41 / 1e-05 DNA/RNA-binding protein Kin17, conserved region (.1) Lus10039439 [exp] 46 / 2e-05 ND 45 / 1e-05 Lus10004607 [exp] 42 / 0.0006 AT1G33520 396 / 8e-135 modifier of snc1, 2, D111/G-patch domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G204900 [exp] 560 / 0 AT1G55460 561 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1) Potri.008G055300 [exp] 548 / 0 AT1G55460 546 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF10357 [flax] [poplar] Kin17_mid Domain of Kin17 curved DNA-binding protein
Representative CDS sequence Show only first row Show all	>Lus10005161 pacid=23141915 polypeptide=Lus10005161 locus=Lus10005161.g ID=Lus10005161.BGIv1.0 annot-version=v1.0 ATGCCGAAGAACGATTTCCTAACCCCGAAGGCGATCGCCAACAGAATAAAGGCGAAAGGTCTGCAGAAGCTGCGATGGTACTGCCAGATGTGTCAGAAGC AGTGCAGGGACGAGAATGGCTTCAAGTGCCATTGCATGAGCGAGAGCCACCAGCGCCAGATGCTAATCTTCGGCCAAAACCCTAACCGCGTCGTCGAGGG CTACACCGACGAGTTCGAGACAGGATTCCTCGACCTCATGAAGCGCAGCCACCGATTCTCCCGTGTAGCTGCCACCGTCGTCTACAACGAGTACATCCAC GACCGCCACCACGTCCATATGAACTCCACACAGTGGGCTACGCTCACCGAGTTCGTCAAGCACCTAGGCCGGACGGGGAAGTGCAAAGTGGATGAGACCC CTAAAGGTTGGTTTATCACTTACATCGATCGGGATTCCGAGACTATGTTCAAGGAGAAGTTGAAGAACAAGAGAGTTAGGGCTGATATGGTGGACGAGGA GAGACAGGAGAGGGAAATCCAGAAGCAGATTGAGAAGGCAGAGCAGTTGTTGAAAAGTGGGGACGGAGAGGGCAACGGTGTTGATGCTGATGCTGTTGAG CCTCCGGCGAAGGACTTGAAGCTTGATGCTGAAGGGGTTAAGATTGGATTTCAATTGGGTTCCAAGAGTAGCAACAATGTTGGGAAGGATAGAGGTGAGA GTTCGAATTCAAGATTGGTTTTTGAGGATGCTGAGGAGGAAAAAGATGGGTTGAACTCGAAGAAGAATAAATCAAGTGGTGATGTCGGAAAAGGCGGGAA GTCTGCATTAGATGAGCTTATGAGAGAGGAAGAGAAGGTGAAGGAGAGAAAGAACCGGAAGGATTACTGGCTGTTTGAAGGGATTATTGTTAAGGTTATG AGCAAGTCATTGGCGGAGAAAGGGTATTATAAGCAGAAAGGAGTTGTGAAGAAGGTGATCGATAAGTATGTCGGGGAGATTGAGATTCTTGAGAGTAAGC ATCGGTTAAGGGTTGATCAGGTTGAGCTTGAGACGGTCATCCCTCAGATTGGAGGTTTGGTGAAGATAGTGAATGGAGCGTATAGAGGGTCTAATGCAAG GCTTTTGGGAGTCGACACCGATAACTTCTGTGCCAAGGTGCGGATAGAGAAGGGGATTTATGATGGCAGAGTGCTTAAGGCTATAGAATACGAGGACATA TGCAAACTTGCCTGA
AA sequence Show only first row Show all	>Lus10005161 pacid=23141915 polypeptide=Lus10005161 locus=Lus10005161.g ID=Lus10005161.BGIv1.0 annot-version=v1.0 MPKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMLIFGQNPNRVVEGYTDEFETGFLDLMKRSHRFSRVAATVVYNEYIH DRHHVHMNSTQWATLTEFVKHLGRTGKCKVDETPKGWFITYIDRDSETMFKEKLKNKRVRADMVDEERQEREIQKQIEKAEQLLKSGDGEGNGVDADAVE PPAKDLKLDAEGVKIGFQLGSKSSNNVGKDRGESSNSRLVFEDAEEEKDGLNSKKNKSSGDVGKGGKSALDELMREEEKVKERKNRKDYWLFEGIIVKVM SKSLAEKGYYKQKGVVKKVIDKYVGEIEILESKHRLRVDQVELETVIPQIGGLVKIVNGAYRGSNARLLGVDTDNFCAKVRIEKGIYDGRVLKAIEYEDI CKLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10005161 [exp]	0	1
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001696 [exp]	1.4	0.8884
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10004121 [exp]	2.0	0.8771
					Lus10014600 [exp]	3.2	0.8413
AT5G10750			Protein of unknown function (D...		Lus10042428 [exp]	4.6	0.8637
AT1G71180			6-phosphogluconate dehydrogena...		Lus10001349 [exp]	4.9	0.8569
AT3G47940			DNAJ heat shock family protein...		Lus10036668 [exp]	5.6	0.7573
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	8.1	0.8063
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Lus10036644 [exp]	9.8	0.8373
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10017846 [exp]	10.1	0.7957
AT3G06170			Serinc-domain containing serin...		Lus10004430 [exp]	10.4	0.8168

Compare expression of checked genes

Lus10005161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.