Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55360 541 / 0 ECR, CER10, ATTSC13, TSC13 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT5G16010 74 / 5e-15 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G38050 52 / 2e-07 DWF6, DET2, ATDET2 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001695 [exp] 632 / 0 AT3G55360 540 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10017183 [exp] 53 / 5e-08 AT2G38050 138 / 2e-64 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10021127 [exp] 51 / 1e-07 AT2G38050 256 / 3e-87 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10008951 [exp] 51 / 3e-07 AT5G16010 272 / 4e-91 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055400 [exp] 571 / 0 AT3G55360 513 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G204400 [exp] 556 / 0 AT3G55360 486 / 7e-175 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245332 [exp] 74 / 3e-15 AT5G16010 289 / 1e-98 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G013100 [exp] 74 / 5e-15 AT5G16010 298 / 4e-102 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245266 [exp] 72 / 2e-14 AT5G16010 291 / 2e-99 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012800 [exp] 66 / 2e-12 AT5G16010 266 / 3e-89 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.013G134433 [exp] 60 / 2e-10 AT2G38050 303 / 3e-104 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.016G110600 [exp] 58 / 1e-09 AT2G38050 350 / 1e-122 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245200 [exp] 58 / 2e-09 AT5G16010 295 / 9e-101 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.005G047800 [exp] 57 / 4e-09 AT2G38050 295 / 8e-101 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF02544 [flax] [poplar] Steroid_dh 3-oxo-5-alpha-steroid 4-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10005162 pacid=23141935 polypeptide=Lus10005162 locus=Lus10005162.g ID=Lus10005162.BGIv1.0 annot-version=v1.0 ATGAAGGTCACTGTTGTTTCTCGCAGTGGCAAAGAGGTCGTCAAAGGAGGCCTCGACCTCTCTCCTTCGGCTACGGTAGCTGATCTGCAAGACGCAATTC ATAAGCGAACCAAAAAGTTCTATCCTTCAAGGCAGCGGTTGACCCTTCCTGTCTCCCCCGGGTCGAAAGAGAGGCCTACAGTGCTCAACTACAAGAAGAG CCTCAACGAATACACCGATGGAAACTCCGAAAGCTTGACGGTCGTTTTCAAGGATCTAGGTCCTCAAGTCTCCTACCGTACACTCTTCTTCTTTGAGTAC TTGGGACCTTTGCTACTCTACCCGGTCTTCTATTTCGTCAACGTCTATGAATTCCTTGGCTACAAAGGTGAGCGTGTTATTCAGCCCGTTCAGACATATG CTCTATACTACTGGTGCTTCCACTACTTCAAGCGCATTATGGAGACATTTTTCATCCACCGATTCAGCCACGCTACCTCTCCTTTATCAAACGTGTTCCG TAACTGTGCATACTATTGGACATTTGGTTGCTACATTGCTTATTATCTGAATCACCCACTCTACACCCCTGTTGGTGACCTTCAGATGAAGATCGGTTTG GGTTTTGGTGTGCTTTGCCAAATCTCAACCTTGTACTGCCACATACTGCTTAGCAACCTCAGAGGCAAAGATGGAAGTGGCGGATATCAAATCCCTCGTG GGTTTCTTTTCAACATTGTTACGTGTGCAAATTACACGACGGAGATCTATCAGTGGTTGGGCTTCAACATCGCAACTCAGACAATTGCAGGCTATATCTT CCTTGTGGTTGCTGCTTCGATCATGACGAACTGGGCTCTTGCAAAGCATCGAAGGTTGAGAAAGCTATTTGATGGGAAAGATGGAAGGCCAAAGTACCCA CGCCGATGGGTGATACTACCTCCATTCCTGTAG
AA sequence Show only first row Show all	>Lus10005162 pacid=23141935 polypeptide=Lus10005162 locus=Lus10005162.g ID=Lus10005162.BGIv1.0 annot-version=v1.0 MKVTVVSRSGKEVVKGGLDLSPSATVADLQDAIHKRTKKFYPSRQRLTLPVSPGSKERPTVLNYKKSLNEYTDGNSESLTVVFKDLGPQVSYRTLFFFEY LGPLLLYPVFYFVNVYEFLGYKGERVIQPVQTYALYYWCFHYFKRIMETFFIHRFSHATSPLSNVFRNCAYYWTFGCYIAYYLNHPLYTPVGDLQMKIGL GFGVLCQISTLYCHILLSNLRGKDGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTIAGYIFLVVAASIMTNWALAKHRRLRKLFDGKDGRPKYP RRWVILPPFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10005162 [exp]	0	1
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006248 [exp]	1.0	0.8982
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10025335 [exp]	2.0	0.8640
					Lus10027092 [exp]	2.6	0.7587
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10001695 [exp]	3.5	0.8631
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10041177 [exp]	5.5	0.7971
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10012611 [exp]	6.0	0.8277
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10010108 [exp]	8.5	0.7586
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006637 [exp]	9.9	0.7354
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10036940 [exp]	12.0	0.7274
AT5G35180			Protein of unknown function (D...		Lus10040011 [exp]	20.6	0.7554

Compare expression of checked genes

Lus10005162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.