Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12110 767 / 0 ACT11 actin-11 (.1) AT3G53750 766 / 0 ACT3 actin 3 (.1) AT2G37620 766 / 0 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT5G59370 764 / 0 ACT4 actin 4 (.1.2) AT3G46520 763 / 0 ACT12 actin-12 (.1) AT5G09810 763 / 0 ACT2/7, ACT7 actin 7 (.1) AT3G18780 742 / 0 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT1G49240 740 / 0 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT2G42100 675 / 0 Actin-like ATPase superfamily protein (.1) AT2G42090 568 / 0 ACT9 actin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001694 [exp] 785 / 0 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005457 [exp] 777 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 777 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10016558 [exp] 777 / 0 AT3G12110 768 / 0.0 actin-11 (.1) Lus10029286 [exp] 773 / 0 AT3G46520 768 / 0.0 actin-12 (.1) Lus10016259 [exp] 771 / 0 AT3G46520 767 / 0.0 actin-12 (.1) Lus10006783 [exp] 765 / 0 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 765 / 0 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005819 [exp] 765 / 0 AT5G09810 778 / 0.0 actin 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G204300 [exp] 776 / 0 AT3G12110 733 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 776 / 0 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 776 / 0 AT3G12110 767 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 775 / 0 AT3G12110 765 / 0.0 actin-11 (.1) Potri.001G309500 [exp] 764 / 0 AT5G09810 775 / 0.0 actin 7 (.1) Potri.019G010400 [exp] 763 / 0 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G453600 [exp] 761 / 0 AT5G09810 769 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 719 / 0 AT5G09810 731 / 0.0 actin 7 (.1) Potri.006G139900 [exp] 573 / 0 AT5G09810 554 / 0.0 actin 7 (.1) Potri.001G326600 [exp] 352 / 1e-119 AT3G27000 758 / 0.0 WURM, actin related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin
Representative CDS sequence Show only first row Show all	>Lus10005163 pacid=23141905 polypeptide=Lus10005163 locus=Lus10005163.g ID=Lus10005163.BGIv1.0 annot-version=v1.0 ATGGCAGAAGGTGAGGATATCCAGCCCCTCGTCTGCGACAATGGAACAGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCCCCTCGTGCTGTGTTCC CCAGTATTGTTGGTCGTCCACGTCACACTGGCGTGATGGTTGGAATGGGTCAGAAAGATGCCTATGTGGGTGATGAAGCCCAGTCCAAGAGAGGTATTTT GACATTGAAATACCCAATTGAACATGGTATTGTGAACAATTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAACGAGCTTCGTGTTGCTCCG GAAGAGCACCCGGTTCTTCTGACTGAGGCTCCTCTGAACCCCAAGGCAAATCGTGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACACCCCTGCCA TGTATGTTGCTATTCAGGCTGTATTGTCACTGTATGCCAGTGGTCGTACAACTGGTATCGTGCTAGATTCTGGTGATGGTGTTAGCCACACAGTCCCCAT CTACGAGGGTTACGCTCTCCCTCATGCCATCCTTCGTCTCGACCTTGCTGGGCGTGACCTTACAGATAGCTTAATGAAGATCCTCACCGAGCGGGGTTAT TCTTTTACCACTACAGCAGAACGGGAAATTGTGAGGGACATGAAAGAAAAGCTAGCTTACATCGCTCTCGACTTTGAGCAGGAAATGGAAACAGCCAAAA CTAGCTCATCTGTCGAGAAGAGTTACGAATTGCCTGATGGACAGGTCATCACCATAGGTGCTGAGCGTTTCCGTTGCCCGGAAGTCCTGTTCCAACCATC CATGATAGGAATGGAAGCTGCAGGGATCCACGAGACAACTTACAATTCCATCATGAAGTGTGACGTGGATATTAGGAAGGACTTGTACGGTAACATTGTG CTCAGTGGTGGTTCAACTATGTTCCCTGGTATTGCTGATAGAATGAGCAAAGAGATCTCTGCCCTTGCTCCAAGCAGCATGAAGATCAAGGTTGTTGCAC CACCAGAAAGGAAATACAGTGTTTGGATTGGCGGTTCCATCTTAGCTTCGCTTAGCACCTTCCAGCAGATGTGGATCGCAAAGGCAGAGTACGATGAGTC TGGACCATCGATTGTTCACAGGAAGTGCTTCTGA
AA sequence Show only first row Show all	>Lus10005163 pacid=23141905 polypeptide=Lus10005163 locus=Lus10005163.g ID=Lus10005163.BGIv1.0 annot-version=v1.0 MAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGY SFTTTAEREIVRDMKEKLAYIALDFEQEMETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV LSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	0	1
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10040883 [exp]	2.6	0.8932
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10028478 [exp]	2.8	0.8542
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10012512 [exp]	3.0	0.8711
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10014390 [exp]	3.5	0.8766
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037908 [exp]	5.3	0.8377
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	5.9	0.8570
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10010321 [exp]	6.0	0.8682
AT1G09130			ATP-dependent caseinolytic (Cl...		Lus10020649 [exp]	8.8	0.8610
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	10.2	0.8327
AT1G49510		EMB1273	embryo defective 1273 (.1)		Lus10027929 [exp]	10.6	0.8324

Compare expression of checked genes

Lus10005163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.