Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39630 377 / 9e-128 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) AT3G46540 158 / 7e-44 ENTH/VHS family protein (.1) AT1G08670 143 / 4e-39 ENTH/VHS family protein (.1) AT3G23350 112 / 9e-28 ENTH/VHS family protein (.1) AT1G20575 50 / 2e-06 DPMS1 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001691 [exp] 503 / 1e-176 AT2G39630 479 / 3e-171 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10023414 [exp] 446 / 8e-155 AT2G39630 504 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10040296 [exp] 421 / 1e-144 AT2G39630 476 / 3e-170 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10040297 [exp] 269 / 8e-87 AT3G46540 191 / 9e-60 ENTH/VHS family protein (.1) Lus10001692 [exp] 219 / 9e-69 AT3G46540 57 / 8e-10 ENTH/VHS family protein (.1) Lus10040824 [exp] 196 / 8e-58 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1) Lus10016556 [exp] 193 / 1e-56 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1) Lus10023415 [exp] 181 / 1e-53 AT3G46540 123 / 3e-34 ENTH/VHS family protein (.1) Lus10021173 [exp] 137 / 2e-35 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055700 [exp] 434 / 3e-150 AT2G39630 499 / 5e-179 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.010G204000 [exp] 424 / 6e-146 AT2G39630 509 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.008G055600 [exp] 191 / 2e-56 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1) Potri.009G030500 [exp] 183 / 5e-53 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1) Potri.001G239200 [exp] 179 / 2e-51 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1) Potri.010G204100 [exp] 135 / 4e-36 AT1G08670 113 / 1e-30 ENTH/VHS family protein (.1) Potri.002G010300 [exp] 51 / 8e-07 AT1G20575 452 / 1e-163 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G250900 [exp] 48 / 5e-06 AT1G20575 447 / 6e-162 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00535 [flax] [poplar] Glycos_transf_2 Glycosyl transferase family 2 CL0009 [flax] [poplar] ENTH_VHS PF01417 [flax] [poplar] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Lus10005164 pacid=23141930 polypeptide=Lus10005164 locus=Lus10005164.g ID=Lus10005164.BGIv1.0 annot-version=v1.0 ATGGAGCTCCTATGGACGATTGCAGAGCAGTTCTTCGTTCTAATCCTAATAGTTGGTATTCTGTTGCTCTCAGCAATGATCTTCGAAGCGTACCGAAGAA GAAACAACAAGCACATTGATCGTCCTGCTTTTTTCGAGGATCCGAATTCCCTGAAACAGATTCCAAGTCCACACCTAATAGATCCTGCAGAAAAGTACAT ATCTTTGATCATTCCTGCATTCAATGAAGAGCACAGGCTTCCTGCAGCTCTTGATGAAACAATTAAGTACGTTGAAGCAATTATCTTCAACAAACGTGCA TCAAAGGATAGGTCTTTTACTTATGAGGTATTGATTGTTGACGATGGAAGTGCTGATGCTACAAAAAGAGTGGAATTTGACTTTGTGGGAAAATACTCAG TGGATAATGTAAGGGTTATCCTTCTTGGGCAAAACCATGGTAAAGGAGAAGCTATTAGAAAAGGTATGCTTCATTCACGTGGTGAACTACTTCTAATGCT GGATGCAGATGGGGCTACAAAAGTTACTGATCTGGAGAAGCTTGAACAGAAGATTCTTGCAGTTGCAAATGCTGAAGATACTAAGGATGGAAAGTCGGCT TTTAGGATAGGTGACATCCCAGTAGTTGCATTCGGTTCTCGTGCTCATCTTGAAGAGAAGGCTTTGGCATCAAGGAAGTGGTACCGTAATTTTCTGATGA AAGGCTTCCATCTTGTGGTTCTCTTGGCTGCTGGTCCTGGTATTCGTGATACCCAATGTGGGTTTAAGATGTTTACGAGGGCTGCTGCGGGGAAGCTTTT CGCAAATATCAGACTCAAAAGATGGTGCTTGGACGTAGAGTTGGCAGAGGAATTCAGCAGCATTCTACCAGAAATGGCAGGAAGCCCATTTCTGATAGAA TTCAAGAGACAAGCATCCTTCTTCATCAAGGAGAAGATCAAAACCACTCGCTTGGCGCTGACCGATGTCACGCCTGCACAATTATTGACAGAAGAAGCAA CAAGCGAGGATGTATGGCCGCCGGACACACGCAGCATGGGAGCAATCTCGAAAGCCGCCTTCGATGTTGATGATTACTGGAGAATTGTGGACATCGTACA CCATAAGTTGATAAGTTATGATGAAGAGAGTTGGCGGGTATCTTACAAGACATTGCTGCTGTTGGAACATCTTCTAACCCATGGACCACTTAGAGTTGCT GAAGAATTCGAAAGACGGAGGCCAGTCATCAGGAAGATGGGCTCTTCTTTCGCTTTCTACAGTGAAAAAGGATGCAAATTGAACTGGGGATTGAGGGTGA GAAATCTATCGAGGAGGGTGGTAAAGCTAATTGAAGACGGTGAATTTCTCATTGAAGAAAGAACCAGACTTCGCAAGTTAACAAGTGGGATACAAGGGTT TGGAAGCTTCAACAATGACCAACCATCCACTTCTTTTTCGGATTCAGATGATGGCCAGAGTCCTGATTCGACCGGGAGTCAGAGTCCGGATTCAACTGGC GGCTTCACTCTAACAATGCTGACGAGGCTGAACTCCAACGAGGACTGTTCAGAAAATCAGATTCATTCTTATGAAGAACTTCCAATGGAAGATGATGAAA CTGAGGCTATATCTATCGAGTGCCATAACCTTTTGTTTAACAGTGACAATCCAACAACAGTCAGCTTATCTTCTCCCTAA
AA sequence Show only first row Show all	>Lus10005164 pacid=23141930 polypeptide=Lus10005164 locus=Lus10005164.g ID=Lus10005164.BGIv1.0 annot-version=v1.0 MELLWTIAEQFFVLILIVGILLLSAMIFEAYRRRNNKHIDRPAFFEDPNSLKQIPSPHLIDPAEKYISLIIPAFNEEHRLPAALDETIKYVEAIIFNKRA SKDRSFTYEVLIVDDGSADATKRVEFDFVGKYSVDNVRVILLGQNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLEQKILAVANAEDTKDGKSA FRIGDIPVVAFGSRAHLEEKALASRKWYRNFLMKGFHLVVLLAAGPGIRDTQCGFKMFTRAAAGKLFANIRLKRWCLDVELAEEFSSILPEMAGSPFLIE FKRQASFFIKEKIKTTRLALTDVTPAQLLTEEATSEDVWPPDTRSMGAISKAAFDVDDYWRIVDIVHHKLISYDEESWRVSYKTLLLLEHLLTHGPLRVA EEFERRRPVIRKMGSSFAFYSEKGCKLNWGLRVRNLSRRVVKLIEDGEFLIEERTRLRKLTSGIQGFGSFNNDQPSTSFSDSDDGQSPDSTGSQSPDSTG GFTLTMLTRLNSNEDCSENQIHSYEELPMEDDETEAISIECHNLLFNSDNPTTVSLSSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10005164 [exp]	0	1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10011634 [exp]	1.4	0.9379
AT5G65540			unknown protein		Lus10025712 [exp]	1.7	0.9255
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10014794 [exp]	2.0	0.9260
AT2G01460			P-loop containing nucleoside t...		Lus10027063 [exp]	5.3	0.9175
AT5G44090			Calcium-binding EF-hand family...		Lus10008247 [exp]	6.3	0.9169
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	6.3	0.9106
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10003406 [exp]	8.1	0.9037
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	10.1	0.9151
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018126 [exp]	10.5	0.8926
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Lus10012250 [exp]	10.5	0.8718

Compare expression of checked genes

Lus10005164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.