Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55420 211 / 3e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023413 [exp] 269 / 2e-91 AT3G55420 258 / 3e-87 unknown protein Lus10040295 [exp] 269 / 2e-91 AT3G55420 249 / 4e-84 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055800 [exp] 280 / 5e-96 AT3G55420 254 / 4e-86 unknown protein Potri.010G203900 [exp] 279 / 1e-95 AT3G55420 253 / 7e-86 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005165 pacid=23141937 polypeptide=Lus10005165 locus=Lus10005165.g ID=Lus10005165.BGIv1.0 annot-version=v1.0 ATGGCGGAGAAGGATAAACAGAAGAAGCAAAAAAAAGCAGGCAGTCACAACAAGAAGCAAAAGTACCAGCACCCTAACGAACCAACCTCGGGCCCAGATT TGTCTTTCAAGCCCATCTCCGAAGTAAAGGGGCTCCGCTTCGGCGGCCAATTCATCGTCAAATCCTTCACAATCCGACGGGCCCGCCCTCTAGAGCTCCT CAAGATCCTTTCCTATCCTTCTCCTCCGGTAAAACCCCCGGAAATCCCGTTCCCATCGACCACCGCTTTCCTCCCGACCAAGTTCACGATCCTGGCCCAC CACGCCTGGCACACACTAACGCTAGGACTGGGGACGAAGAGATCGAAGGTGGTGGTGTTCGTTTTCGAGTCGGAATCGCTGAAATCGAAGGCCGCCGACA AGGCGTGGCCGGCGGAGATAGCGCTGGGGGAGGTGAACAGGAAGCTGATCAGGGGGCTGACAGGGTGCGAATTGGCGCGGTTCAAGTTTAGGAAAGGGTG CATCACTTTCTATGTTTACGCGGTGAGGAAGGAAGGCAGCGTTGGGTTCGGCGGGTGCGGTGAGGATCTGAGAGTGATTCTTCAGTCGGTGGCTTCTCTC AACGATTTCTTGGACCATACTGCTATGCTCGCTATGCCTAACCAGCGCTCCATTAATTACGCCGCCCGCGCTGCTGCTTCCCCGCCTGTCGCCATGGCTC GTTGA
AA sequence Show only first row Show all	>Lus10005165 pacid=23141937 polypeptide=Lus10005165 locus=Lus10005165.g ID=Lus10005165.BGIv1.0 annot-version=v1.0 MAEKDKQKKQKKAGSHNKKQKYQHPNEPTSGPDLSFKPISEVKGLRFGGQFIVKSFTIRRARPLELLKILSYPSPPVKPPEIPFPSTTAFLPTKFTILAH HAWHTLTLGLGTKRSKVVVFVFESESLKSKAADKAWPAEIALGEVNRKLIRGLTGCELARFKFRKGCITFYVYAVRKEGSVGFGGCGEDLRVILQSVASL NDFLDHTAMLAMPNQRSINYAARAAASPPVAMAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55420			unknown protein		Lus10005165 [exp]	0	1
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10040212 [exp]	7.2	0.9209
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10015080 [exp]	9.8	0.8854
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10025593 [exp]	12.1	0.9244
AT3G16210			F-box family protein (.1)		Lus10015408 [exp]	17.0	0.9026
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10027059 [exp]	18.5	0.9186
AT5G14940			Major facilitator superfamily ...		Lus10032177 [exp]	19.2	0.9132
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012678 [exp]	25.5	0.9146
AT4G14740			Plant protein of unknown funct...		Lus10041187 [exp]	26.5	0.9001
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020832 [exp]	29.6	0.9097
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10027837 [exp]	30.0	0.8957

Compare expression of checked genes

Lus10005165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.