Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55430 384 / 4e-129 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 364 / 2e-121 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G39640 341 / 3e-111 glycosyl hydrolase family 17 protein (.1) AT3G46570 328 / 2e-108 Glycosyl hydrolase superfamily protein (.1) AT1G32860 284 / 9e-91 Glycosyl hydrolase superfamily protein (.1) AT2G16230 281 / 2e-88 O-Glycosyl hydrolases family 17 protein (.1) AT5G42720 278 / 3e-88 Glycosyl hydrolase family 17 protein (.1) AT1G30080 275 / 3e-87 Glycosyl hydrolase superfamily protein (.1) AT2G27500 265 / 1e-83 Glycosyl hydrolase superfamily protein (.1.2.3) AT5G42100 262 / 3e-82 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040294 [exp] 405 / 3e-137 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10016539 [exp] 365 / 5e-121 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 363 / 5e-120 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 352 / 2e-116 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 347 / 1e-114 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 315 / 2e-102 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10021088 [exp] 307 / 2e-100 AT5G24318 324 / 3e-108 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020618 [exp] 290 / 5e-93 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10004869 [exp] 288 / 1e-92 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G056000 [exp] 472 / 1e-163 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G055900 [exp] 422 / 5e-144 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G203800 [exp] 397 / 5e-134 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G240000 [exp] 396 / 2e-133 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.012G017800 [exp] 365 / 7e-122 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.015G010100 [exp] 352 / 2e-117 AT5G24318 466 / 1e-163 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G261800 [exp] 283 / 1e-89 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G183800 [exp] 281 / 2e-89 AT2G16230 515 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G185100 [exp] 281 / 2e-89 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G182800 [exp] 281 / 4e-89 AT2G16230 514 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10005166 pacid=23141923 polypeptide=Lus10005166 locus=Lus10005166.g ID=Lus10005166.BGIv1.0 annot-version=v1.0 ATGGGAACCATTAATCCTCTGTATCGCTTGGTCGCCATCCTCTGCATATCCGCCACCGCTAGCGCTATCGGCATCAACTATGGGACCTTAGGTGACAACC TGCCGACACCTGCGAAGGTGGCCAATTTCCTCAAAACCAAGACGATCATAGACAGCGTGAAGCTCTTCGACGCGAATCCCGATATTCTTCGTGCTTTCGC CAACACCGGACTTTCTGTCACCGTCACTATCGCCAATGGCCAAATCCCGTCTCTAACGAACCTCGATAACGCCAAAGGATGGATAGCCAAAAACATTGCT CCCTACCATCCCCAGACCAAGATCAACCGGATCCTCGTGGGCAACGAGATCATGGCTACTCTTGACGATAATTTGATTTCGAATCTCGTCCCCGCCATGA AATCCGTTCATCAAGCACTTCTTGGCTCCGGTATCAATGATGTTCAGGTAACAACTGCACATTCTATGGGAATCTTGAAAGTGTCAGAGCCGCCAAGTGC CGGGAAGTTTTGGCCAGGGCACGACGTAGCCATATATGGACCGATGCTCCAATTCCTCCGGCAAACAAAGTCTCCCTTCATGGTCAACCCATACTCCTAC TTCGGTTACTCACCCAGTATGGCCAACTACGCCCTCTTCCGCCCTAATGCTGGAATCCCTGACCCAGCTACTGGCATCACCTACTCCAACATGTTCGACG CGACACTCGACGCCACCTACTCTGCTATGAAGAAGCTTGGATACAAAGACGTCGATCTCATTGTCGGCGAGACCGGATGGCCAACCCAATGCCTCCCTCA ACAGCTTGAGTGCACTACTGAAAATGCAGCGTGGTACAACTCCCAGCTGGTGCGTCGGGTTGTTGAGGGTGTGGGGACGCCGTTGGAGCCCAAAAGGCGC ATTGGGATTTTCTTGTTTGCACTGTTTAACGAGAACCTTAAGCCAGGGCCCATTACGGAGCAACATTGGGGGCTTTTCGAACCTAACATGACTCCCGTTT ATGATTGTGGCATCCTCCGAGACAAACAGAATGATGAAGGGAAAAGCGGAAATAGTTCCGCACATCGTGTGGAGGAAGAAGAGACATCAGGATCAGATGA TGATACAACCAAGTCGTCGAATTCTGGACCTGTTTCCGCTCCGCTTTCTTCTCCAGACCCGCCCCCCGCACCCGGCAATATCCCTAAACCTGCACCAAAA TCTGCATCTTCATCTAGCGGAGCCACCCACTTGACGATCAGCTTTTCCTCCGCCCCACTTGCTCAAGCGGGCCGTCAAGGCGGTGGTGTTGGGAGGAAGG GAGGTGGAGCTCCGGCGGCGGTGGGAAGTGGAGGGAAGAAATGGTGCGTGGCGAAAGCAGGAGCAGCGGCTCCGACGTTGCAGTCGAATATAGACTATGC TTGCGGTAATGGTGCAGATTGCAAGCCCATCGAGGCGGGCGGTTCGTGCTTTGAGCCCAACAACGTTGCGACCCATGCTACGTTTGCAATGAACGCTTAC TATCGAGCCAAAGGTGGGCTTCAGGCCACTTGCGGTTTTGCCAACACGGGCCTTCTTACCACCGTTGATCCAAGTAAATATATACCATCCTAA
AA sequence Show only first row Show all	>Lus10005166 pacid=23141923 polypeptide=Lus10005166 locus=Lus10005166.g ID=Lus10005166.BGIv1.0 annot-version=v1.0 MGTINPLYRLVAILCISATASAIGINYGTLGDNLPTPAKVANFLKTKTIIDSVKLFDANPDILRAFANTGLSVTVTIANGQIPSLTNLDNAKGWIAKNIA PYHPQTKINRILVGNEIMATLDDNLISNLVPAMKSVHQALLGSGINDVQVTTAHSMGILKVSEPPSAGKFWPGHDVAIYGPMLQFLRQTKSPFMVNPYSY FGYSPSMANYALFRPNAGIPDPATGITYSNMFDATLDATYSAMKKLGYKDVDLIVGETGWPTQCLPQQLECTTENAAWYNSQLVRRVVEGVGTPLEPKRR IGIFLFALFNENLKPGPITEQHWGLFEPNMTPVYDCGILRDKQNDEGKSGNSSAHRVEEEETSGSDDDTTKSSNSGPVSAPLSSPDPPPAPGNIPKPAPK SASSSSGATHLTISFSSAPLAQAGRQGGGVGRKGGGAPAAVGSGGKKWCVAKAGAAAPTLQSNIDYACGNGADCKPIEAGGSCFEPNNVATHATFAMNAY YRAKGGLQATCGFANTGLLTTVDPSKYIPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10005166 [exp]	0	1

Compare expression of checked genes

Lus10005166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.