Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24270 742 / 0 EMB140 EMBRYO DEFECTIVE 140 (.1.2) AT5G41770 51 / 4e-06 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G45990 48 / 4e-05 crooked neck protein, putative / cell cycle protein, putative (.1) AT1G04080 46 / 0.0001 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G51110 44 / 0.0006 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028994 [exp] 54 / 6e-07 AT1G17760 957 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024952 [exp] 52 / 2e-06 AT1G04080 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10022874 [exp] 49 / 1e-05 AT1G04080 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10003684 [exp] 49 / 2e-05 AT1G17760 971 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041477 [exp] 45 / 0.0004 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10034294 [exp] 44 / 0.0005 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10038132 [exp] 0 / 1 AT5G49810 192 / 5e-54 methionine S-methyltransferase (.1) Lus10016122 [exp] 0 / 1 AT4G24270 45 / 1e-05 EMBRYO DEFECTIVE 140 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229732 [exp] 945 / 0 AT4G24270 860 / 0.0 EMBRYO DEFECTIVE 140 (.1.2) Potri.003G106200 [exp] 53 / 9e-07 AT1G17760 1037 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G094400 [exp] 52 / 2e-06 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.003G137200 [exp] 47 / 6e-05 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05391 [flax] [poplar] Lsm_interact Lsm interaction motif
Representative CDS sequence Show only first row Show all	>Lus10005168 pacid=23163374 polypeptide=Lus10005168 locus=Lus10005168.g ID=Lus10005168.BGIv1.0 annot-version=v1.0 ATGGAAGTGAACGAAGAAAATCAGCCAACCTTTTCTCCTGAAGAGGTGACTAATGTTCCGAGTGAAAAGAACCCTCAGCCTCTTTTGTCCAACGAGGATG AGGAATCCGATGAAGACTCCGGTTCAGACTCAGAGGACGATGCCGAGCTTGCTGAGCAACTTAAAACCCTAGAATTTGAACTGTCTACCAATCCTTCCAA CTACGACGTTCATGTTCAATGCATAAATCTGCTAAGGAGAATGGGGGAGTTGGAGAAGCTGAGGCAGGCAAGAGAAGCTATGAACACATTGTTTCCATTG ACGCCGTCTATGTGGGAAGAATGGGCTAAAGATGAAGCTTCTCTGTCCTCTGGGCCCGAGGCTGTTGCGACTATTGAGAAGTTGTACGAGCGTGGAGTCT TTGACTATTTGTCCGTCTCTCTTTGGTGTAAATACTTAAACTACATTCAACAATGCGATCCTTCTGTCCGTGAATGTTCTCCCGGTGGCATCTCAAAAGC CAGAAATCTCTTTGAACGTGCACTTACTGCTGGTGGACTGCACATTGCTGAAGGCAATAAAATATGGGAGGCATACAGGGAATTCGAGGAAGCTATCTTG TATACAATTGATGACACAGATCACAAGGCAAAGGAATCTCAGGTGCAGCGAATTCGGAATCTGTTCCATCGACAATTGTCTGTTCCACTTGCTGATTTGG AATCTACACTTCTAGCTTACAAAGCATGGGAAGTGGAACGGGGGAGTTCAATGAATGTTGAGTCAAGTGATCTAGGTGGTATTGCTGCTCACGTTGGAAC AGCTTACCTGAAGGCAATGGAATTGTATAAAGCCCGCGTTGAGCATGAGGAGAAAATTGTCTTGAAGGACATACCAGAAAGAGAAAAGTTGCAACATTTC ATGAATTACCTGACGTTTGAGAAATCAGTTGGTGACCCAGCACGTGTGCAAGTTCTTTATGAGCGTGCAATATCCGAGTTTCCTGTATCTAGTGACCTTT GGCTTGACTACTTGCGCTATATGGATAGGACCTTGAAGGCAGGTAATGTTGTAAGAGATGTTTATAGCAGGGCCTCCAAGAACTGCCCTTGGGTTGGAGA ACTTTGGACTCATTATTTGCTTGCATTAGAACGTGGTCACGCTCCAGAGAAAGATATTTTATCCGTTTTCGAGAGAGCATTGCAGTGCACCTTTTCAACC CTAGACGAATACCTTGATTTGTTCCTCACACGAGTTGATGGTTTGAGGCGAAGAATTCTATCTATTACAGAGCAAGAGGGCATTCTAGATTTCTCCTTAC TTTGCTTGATCTCTGGAGATCACTTCTCCCAGCTCCTTGTGTTGAGCCGTGAATCTGATCCTTCCGCTTACAACTGTTTTGTTGTTAACCGGGTTATGTC TCTGCAGTATGCATCAGACTACTTGTCACCACAGCTGAAGAACACAGATAACTTGTTGCGCCTGTATGCTTATTGGGCCCGCCTAGAACTAAATTTGGGG AAAGATGTAGTCGCAGCACGAGGTGTTTGGGAGAATTTTCTTAAGATGTGTGGTTCAATGTTGGAGGGCTGGCAAGGTTATATCACATGGGAAATGGAGT CAGGTAACATCGCTGAAGCTAGATCAATATATAAGAGATGCTACAGTAAGAGATTTGCTGGAACAGGATCAGAGGGCATATGCTATTCTTGGCTGCGGTT TGAGAGAGAATTTGGAACACTTGAAGATTTTGACCTTGCTCTGCTGAAGGTCACACCTCGTCTGGAAGAACTGCAGTTATATAAGATTCAGCAAGAGTTA AAACAGCCTGCTGTTACGACTGGGCAGAAAGAGTATCCTGTTACAAAGAATGCAGGCGAGAAGAGAAAAGGAGGTTCAAACATTAGTGACGAACAGTCTC CAGCAAAGAAGAAGAAGAAGACAACCAATCAAACCCAAAGGAAAGAACAAGATATAGTTCAGCATCAAGCTCCCGAGAAAGGTCATGGAGATGAAACTGA TAAACTGAAGGATAACATACAAAACACTACCAATGAACCAGATAAAAGGACGGAAGAGTCTGGCAGTGGAAAAGCTAAATTATACAGAGACCAGTGCACT ATATTCATCTCCAATCTAAATTTCAAGGCAAGTGAAAATCAGCCTTCTTCTTCATTAGTGGCCAACAAATGCCTGCCAACTCAGAAGATATACGTAAATT TTTTGCTGATGTCGGTGGGGTTGTTTCCATCCGGATACTGCATGACAAGTTTACGGGAAAGTCGAGGGACAGTTGAATGGAGTGGTCAGTGTGGGTTAGC ATACGTGGACTTCTCAGACGACGAGCATCTTGCTGCTGCTGTAGCGAAAAACAAGCAGACGTTGCTTGGTAAAAGGTTGAGCATCGCACGGTCTAATCCT AAAAAGGGGAAGAAAGGAGGAGGTGGTCAAGATGCTGGAAGAGGTGACTCGAGGAAGGCTGAGCTTTCGCCCCTGACAGGCCATAAGCAGAATGAGAATT TGCAGAACACGTTTGCGGTGCCACGAAGCATGGTTAAAGCGCTCGGTTGGAGCAATAAACAGCAGAAAACTAAAGAAGAGGGAGACGAGGAGCCAAAGTC TAACGACGAGTTTAGGAAAATGTTCATCAAAGGTTGA
AA sequence Show only first row Show all	>Lus10005168 pacid=23163374 polypeptide=Lus10005168 locus=Lus10005168.g ID=Lus10005168.BGIv1.0 annot-version=v1.0 MEVNEENQPTFSPEEVTNVPSEKNPQPLLSNEDEESDEDSGSDSEDDAELAEQLKTLEFELSTNPSNYDVHVQCINLLRRMGELEKLRQAREAMNTLFPL TPSMWEEWAKDEASLSSGPEAVATIEKLYERGVFDYLSVSLWCKYLNYIQQCDPSVRECSPGGISKARNLFERALTAGGLHIAEGNKIWEAYREFEEAIL YTIDDTDHKAKESQVQRIRNLFHRQLSVPLADLESTLLAYKAWEVERGSSMNVESSDLGGIAAHVGTAYLKAMELYKARVEHEEKIVLKDIPEREKLQHF MNYLTFEKSVGDPARVQVLYERAISEFPVSSDLWLDYLRYMDRTLKAGNVVRDVYSRASKNCPWVGELWTHYLLALERGHAPEKDILSVFERALQCTFST LDEYLDLFLTRVDGLRRRILSITEQEGILDFSLLCLISGDHFSQLLVLSRESDPSAYNCFVVNRVMSLQYASDYLSPQLKNTDNLLRLYAYWARLELNLG KDVVAARGVWENFLKMCGSMLEGWQGYITWEMESGNIAEARSIYKRCYSKRFAGTGSEGICYSWLRFEREFGTLEDFDLALLKVTPRLEELQLYKIQQEL KQPAVTTGQKEYPVTKNAGEKRKGGSNISDEQSPAKKKKKTTNQTQRKEQDIVQHQAPEKGHGDETDKLKDNIQNTTNEPDKRTEESGSGKAKLYRDQCT IFISNLNFKASENQPSSSLVANKCLPTQKIYVNFLLMSVGLFPSGYCMTSLRESRGTVEWSGQCGLAYVDFSDDEHLAAAVAKNKQTLLGKRLSIARSNP KKGKKGGGGQDAGRGDSRKAELSPLTGHKQNENLQNTFAVPRSMVKALGWSNKQQKTKEEGDEEPKSNDEFRKMFIKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10005168 [exp]	0	1
AT2G04235			unknown protein		Lus10025175 [exp]	1.4	0.9510
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10006741 [exp]	2.0	0.9402
AT5G43310			COP1-interacting protein-relat...		Lus10021172 [exp]	2.4	0.9333
AT1G73460			Protein kinase superfamily pro...		Lus10031329 [exp]	3.3	0.9294
AT5G47690			binding (.1.2.3)		Lus10038777 [exp]	5.7	0.9449
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10023288 [exp]	5.7	0.9315
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	6.9	0.9464
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	7.1	0.9383
AT4G19610			nucleotide binding;nucleic aci...		Lus10040636 [exp]	7.2	0.9270
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10010522 [exp]	7.6	0.9107

Compare expression of checked genes

Lus10005168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.