Plant FIBer expression Database

Lus10005169 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25870 538 / 0 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038133
[exp]
705 / 0 AT2G25870 671 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
Lus10006031
[exp]
613 / 0 AT2G25870 701 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
Lus10005489
[exp]
587 / 0 AT2G25870 689 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G057500
[exp]
599 / 0 AT2G25870 701 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
Potri.006G235301
[exp]
147 / 6e-41 AT2G25870 0 / 1 haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0126 Peptidase_MA PF02130 UPF0054 Uncharacterized protein family UPF0054
CL0137 HAD PF08282 Hydrolase_3 haloacid dehalogenase-like hydrolase
Representative CDS sequence
>Lus10005169 pacid=23163363 polypeptide=Lus10005169 locus=Lus10005169.g ID=Lus10005169.BGIv1.0 annot-version=v1.0
ATGGCGCGGCCTATTTCTCAGGCCACCTCTTTCCCCTTTCTCTCCGTCGTCTCTCGTCAGTCTCCTTCCGGGCTTCTCTTTTCACCGACACCGCACGGCT
TTGGCTCCTCCTCGTTGTTCAACTCCTTGCTCTTCACGACCAGATGCTTCCGCGTTTTGTGCCGGCGAAACCACTGCCAATTCATAAAGCCATTAGTCCC
TGAAATTCGGGCCGCCGGAGGCGGTCAGAGAGGGCACCGGAAAGCAAGTAGACGAGCGACGGTCAAGAGAACGCAGAAGGAATTAGAGCTCGATGTTAGC
ATTTGCATTGAGGATGGCCTTCCCGATGATTCAGAAATCCAGAGTATCGCCGAATTGCTTCGCCTTGACGTGCCGAAGGCGCTGAAATTGGCACTGGATG
GCCTGAAAGGCTCCTCCTACGAAACTCGAGATACTGCTATCACTTGTGTTGATACTTATGACAACATCGAGTTGTCTGTGATGCTTTGCAATGACAGCTT
CATTCGTGAGCTTAACAAAGAATGGAGGGGTGAAGACCGTGCTACTGATGTCCTCTCAATGTCACAACATTCACCCGAACTTAAAATCCCTGTTCTTATG
CTGGGTGACATTGTAGTTTCCGTGGAGACAGCTGCAAGGCAAGCTAAAGAGAGAGGTCATTCACTTCTTGATGAAATTCGCATTCTCCTGGTTCATGGCT
TGTTACATCTTTTAGGATTTGATCATGAGATTAGCGAAGAAGCTGAAACTGAAATGGAGAAAGAGGAGGATGTTCTTCTAAAGACTCTTGGGTGGAAGGG
TAAAGGACTAATTCAAAGTGCGCAGGATGGTGATTGTAAAGCTAATTCTGTTTCAGAAACCTTCGATGACAGAAAGAAAGAAGGCAGTCTTCGGTTCTAC
AAACCAAAGTTCAAGTATATCTTCTGTGACATGGATGGAACATTGCTTAACAGTAAAAGTCAACTTTCGACAACAAATGCAAATGCGTTGAAAGAAGCTA
TGTCAAGAGGAGTAAAGATAGTGATAGCCACTGGAAAGGCTCGACCTGCTGCAATAAATATCTTGAAGACTGTAGGCTTAGCGGATAAAGATGGTCTTGT
TTCAGAGTTCTCTCCTGGTGTTTTCTTGCAGGGTTTGATTATCTATGGTAAGGAGGGACGAGAGATTTTTAGAAGAAATTTAGATCCAAATGTCTGCAGA
GAGGCAGAAGTCATATCTTCAGTTGAGCAACTTCTGGCTGCAGCTGACATACAGAAAATGTTATTTATAGACAGTGCTGAGAGAGTAGCCAATGAACTGA
GGCCGTACTGGTCAGAAGCAACTGGAGGGCGTGCTAGTGTTGTCCAAGCTATATCACATATGCTTGAGATTGTGCCTCTTGGAACATCGAAAGGAAGCGG
GGTACAAATCCTCCTTGATCATTTGGGTGCCACAGCGGAGGAGATAATGGCTATGGGAGACGGAGAGAATGATATTGAGATGCTGGAATTAGCGGCTCTA
GGAGTGGCTCTGAGAAATGGTTCAGAGAAGACGAAAGCTGCGGCGAACGTAATTGGTGCTAGTAATGATGAAGATGGGGTAGCTGATGCTATATATCGTT
ACGCATTTTGA
AA sequence
>Lus10005169 pacid=23163363 polypeptide=Lus10005169 locus=Lus10005169.g ID=Lus10005169.BGIv1.0 annot-version=v1.0
MARPISQATSFPFLSVVSRQSPSGLLFSPTPHGFGSSSLFNSLLFTTRCFRVLCRRNHCQFIKPLVPEIRAAGGGQRGHRKASRRATVKRTQKELELDVS
ICIEDGLPDDSEIQSIAELLRLDVPKALKLALDGLKGSSYETRDTAITCVDTYDNIELSVMLCNDSFIRELNKEWRGEDRATDVLSMSQHSPELKIPVLM
LGDIVVSVETAARQAKERGHSLLDEIRILLVHGLLHLLGFDHEISEEAETEMEKEEDVLLKTLGWKGKGLIQSAQDGDCKANSVSETFDDRKKEGSLRFY
KPKFKYIFCDMDGTLLNSKSQLSTTNANALKEAMSRGVKIVIATGKARPAAINILKTVGLADKDGLVSEFSPGVFLQGLIIYGKEGREIFRRNLDPNVCR
EAEVISSVEQLLAAADIQKMLFIDSAERVANELRPYWSEATGGRASVVQAISHMLEIVPLGTSKGSGVQILLDHLGATAEEIMAMGDGENDIEMLELAAL
GVALRNGSEKTKAAANVIGASNDEDGVADAIYRYAF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G25870 haloacid dehalogenase-like hyd... Lus10005169
[exp]
0 1
AT4G13040 AP2_ERF Integrase-type DNA-binding sup... Lus10011836
[exp]
5.5 0.8497
AT1G26180 unknown protein Lus10035081
[exp]
7.9 0.8034
AT1G77800 PHD finger family protein (.1.... Lus10009786
[exp]
8.0 0.8341
AT1G23230 unknown protein Lus10016701
[exp]
12.8 0.8441
AT1G09020 ATSNF4, SNF4 homolog of yeast sucrose nonfe... Lus10015179
[exp]
15.5 0.8492
AT3G07020 UGT80A2, SGT UDP-glucosyl transferase 80A2,... Lus10024544
[exp]
15.8 0.8519
AT1G23230 unknown protein Lus10035997
[exp]
17.5 0.8413
AT1G27840 ATCSA-1 Transducin/WD40 repeat-like su... Lus10007742
[exp]
21.3 0.8370
AT3G44680 HDA09, HDA9 histone deacetylase 9 (.1) Lus10020570
[exp]
24.9 0.8492
AT5G05310 TLC ATP/ADP transporter (.1.2.... Lus10012891
[exp]
27.7 0.8255

Lus10005169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.