Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038131 [exp] 367 / 1e-128 ND / Lus10038478 [exp] 193 / 3e-60 ND / Lus10023333 [exp] 184 / 1e-56 ND / Lus10031949 [exp] 177 / 7e-54 ND / Lus10022997 [exp] 115 / 8e-32 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G059400 [exp] 367 / 1e-128 ND / Potri.012G102400 [exp] 206 / 3e-65 ND / Potri.015G100500 [exp] 206 / 6e-65 ND / Potri.015G100600 [exp] 189 / 2e-58 ND / Potri.001G341700 [exp] 174 / 9e-53 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10005172 pacid=23163367 polypeptide=Lus10005172 locus=Lus10005172.g ID=Lus10005172.BGIv1.0 annot-version=v1.0 ATGATGGAGTACATCGGAGCTACCGGTGCACCCGTCACATTCGATTCAGTCCCGATAAAACCAGGCATCAATTTCCACTTCATACTGGGCTTCGCTATCG ATGCCGACTCATCAGGAAATCCAACCAACGGCAAATTCTCACCTTACTGGGCCGACACCCTAACCCCGGAATCCATCTCCTCCATCAAATCCCGACACCC TAATCTCAAAGTCATGCTCAGCCTCGGCGGCTGGAGCGACCCCGGCGGCAAAGTCCTCCGCTGGATACCCCCCAAGTCCCGCTCCCTCTGGATCTCCAAC GCCGTTTCCTCCCTCACTTCCCTGATCTCCACCTACCACCTCGACGGCGTCGACGTCGACTACGAGACATTCGGCCGCGGGAACGCCGACTTGGACAGCT TCGCCGTTTGCATCGGGGAGCTCATTTCCCGATTGAAGAAGGCCCAATTGATCTCCGTCGCCACCATCGCGCCTTTCCACTCCACGGTGGCTCCTTACGT GGCGCTGTTTCGCAAGTATGGGGGTTTCGTTGACTACGTCAACTACCAGTTTTACACGGATAAGGTCCGGCACCCGGCGGCGTACGTGGAGGCGTTTGGT GTGAGAGTTGAGGAGTTTGGTAAAGAGAAGGTCTTGCCCAGTTATGAGGTGAATGGGAGAGGGATCCAAGGGGATGGCTTCTTTGATTCGTTGAGTTTGT TGGTAAAGAAAGGGTTTTGTGTGAATGGGGTTATGATTTTCTCCGCCGATGCTTCCGAAGGTGACAATGGTGGTGGTGGTGATGGCAAGTTTTACTATGA GAACAAGTCTCAAGCTTTTCTGCTTAATTCCACCACCAATGCTGGATGTTCTGAGTAA
AA sequence Show only first row Show all	>Lus10005172 pacid=23163367 polypeptide=Lus10005172 locus=Lus10005172.g ID=Lus10005172.BGIv1.0 annot-version=v1.0 MMEYIGATGAPVTFDSVPIKPGINFHFILGFAIDADSSGNPTNGKFSPYWADTLTPESISSIKSRHPNLKVMLSLGGWSDPGGKVLRWIPPKSRSLWISN AVSSLTSLISTYHLDGVDVDYETFGRGNADLDSFAVCIGELISRLKKAQLISVATIAPFHSTVAPYVALFRKYGGFVDYVNYQFYTDKVRHPAAYVEAFG VRVEEFGKEKVLPSYEVNGRGIQGDGFFDSLSLLVKKGFCVNGVMIFSADASEGDNGGGGDGKFYYENKSQAFLLNSTTNAGCSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005172 [exp]	0	1
AT2G29590			Thioesterase superfamily prote...		Lus10040701 [exp]	11.1	0.5118
AT3G07450			Bifunctional inhibitor/lipid-t...		Lus10030541 [exp]	20.6	0.5059
					Lus10017083 [exp]	27.3	0.4948
AT1G73770			unknown protein		Lus10007968 [exp]	53.6	0.4765
AT5G65090		DER4, MRH3, BST...	DEFORMED ROOT HAIRS 4, BRISTLE...		Lus10041708 [exp]	70.2	0.4536
AT5G02220			unknown protein		Lus10001570 [exp]	116.2	0.4353
AT4G37860			SPT2 chromatin protein (.1)		Lus10007985 [exp]	133.7	0.4180

Compare expression of checked genes

Lus10005172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.