Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20690 406 / 1e-134 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 381 / 3e-125 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 249 / 4e-74 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 237 / 1e-69 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 233 / 2e-68 Leucine-rich repeat protein kinase family protein (.1) AT1G72460 228 / 8e-67 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 224 / 6e-65 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 221 / 3e-64 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT2G36570 210 / 9e-60 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 206 / 8e-59 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038128 [exp] 554 / 0 AT5G20690 462 / 2e-159 Leucine-rich repeat protein kinase family protein (.1) Lus10037688 [exp] 298 / 6e-96 AT3G42880 337 / 2e-110 Leucine-rich repeat protein kinase family protein (.1) Lus10015678 [exp] 301 / 2e-94 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10013165 [exp] 298 / 1e-92 AT5G20690 470 / 5e-158 Leucine-rich repeat protein kinase family protein (.1) Lus10008128 [exp] 288 / 9e-90 AT1G72460 412 / 8e-137 Leucine-rich repeat protein kinase family protein (.1) Lus10027645 [exp] 248 / 1e-78 AT1G72460 211 / 8e-64 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 243 / 6e-72 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 239 / 6e-72 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 242 / 3e-71 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G139700 [exp] 435 / 4e-146 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 332 / 4e-105 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 317 / 3e-100 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 252 / 1e-75 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 249 / 2e-74 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 245 / 4e-73 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 244 / 2e-72 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 243 / 6e-72 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 241 / 2e-71 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 231 / 2e-70 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005175 pacid=23163365 polypeptide=Lus10005175 locus=Lus10005175.g ID=Lus10005175.BGIv1.0 annot-version=v1.0 ATGGCCGCTGTTCATCTCCTCCTCCTCCTCCTCACCCTCCTCCCAATTTTCCACCTAGCATTATCTCTCCCCAATGAAGAAGAAGCCGCCCTCCTCCTCA AATTCAAATCCTCACTAAATCACAGCGGTTCTCTAGACGGATGGTCCCCTGGGTCATCCCCTTGCTCTAACCGATGGGTGGGTGTAGTGTGCGAAGATGG CAACATCGTCTCAGATATTCGCCTCTCCAGCTTCTCCCTCTCCGGCACCATCGACGTCGACTCTCTCCAGAAACTTCAAGGACTCCGAACCATCAGTTTC GCTAGCAATTCCTTCGAGGGCCCAATCCCTCCTTTTAATAAATTGGGCGCCTTGAAAGCCCTTTTCCTTTCCAGCAACAAATTCAGTGGTAAAATCCCTG ACGATTTTTTTGCCACCATGTCTTCCCTCAAGAAAGTGTGGCTAGACGGCAACCAATTCACCGGGAAAATACCCGAATCCGTTACTTCACTCCGGTATCT CATAGAGCTTCATCTAGAAGCCAACCAATTCTCCGGTCCAATTCCGCCGCTTAAGGATCCCCCTTCCCAATTAACTTCGCTAGACCTTTCTAAAAACAAA TTGACCGGACCCATTCCTGAAACCCTATCTAAATTCAAGGCATCATCCTTCGCTGCTAACGATGGCCTGTGTGGGCCCCCACTCGCCATCCATTGCACTG ATTCTGAATCTGATGATGATGATGACGACAACAAAAAAGAGGAGGAGACTCCTTCTGATGACAAGTCGCCTCCCCATCCGCCGCCGGAAGCTCACTCTAG TGGCGCGGCGGGTGTAGTGGCCCTTCTCATTATCATCATGGCAGCGGCGGAGGTGCTGGGAAACGGCGGACTGGGGTCGGCCTACAAGGCGACGATGCCG ACAGTGAAGTTGTCGGTAGTTGTGAAGAGAATAAGAGAGATGAATATGCTTGGGAGAGATTTGTTCGACGCAGAAATGAGGCGATTTGGGAGGATTCGCC ATGACAATATATTGACTCCATTGGCTTATCATTTCAGGAAAGAAGAGAAACTCCTTGTCTCTGAATACATGCCTAAAGGCAGCTTATTGTATCTCATGCA CGGTGATCGAGGAATCTGCCATTCAGATCTAAATTGGAAAACGAGACTGAAAATAGTAAAAGGAATAGCCAATGGGTTAAGTTTTCTACACTCAGAATAT GCATCGTACAACCTCCCTCATGGCAACCTCAAGTCAAGCAATGTCCTTCTAAGCGATACATACGAGCCACTTCTTGGAGACTATGCGATGGACCCGCTCG TGAACCCGACCCATGCCTCACAAGCCATGTTTGCATACAAATCCCCAGAGTACACCCTATACAGCCAAGTATCTCACAAGTCGGATGTCTACTGTTTGGG GATTATAATACTGGAAGTGATGACTGGGAAATTCCCGTCCCAATATCTGACAAATGGGAAAGGTGGTACGGACGTGGTGCAATGGGTTGTTGAGGCCAGT CGGGAAGGGAGGGAAAAGGAAGTCATAGACCCGGAGATGGTCAACAACGGAACAAACTCCCTTGAAAATATGGTTCAGCTACTGCAGGTCGGCGTCGCTT GTATCGAGACTGATTCCACCCAACGGTTAGATATGGGGGAAGCTATTAGACGGATAGATGAGATTCAAGTTTAA
AA sequence Show only first row Show all	>Lus10005175 pacid=23163365 polypeptide=Lus10005175 locus=Lus10005175.g ID=Lus10005175.BGIv1.0 annot-version=v1.0 MAAVHLLLLLLTLLPIFHLALSLPNEEEAALLLKFKSSLNHSGSLDGWSPGSSPCSNRWVGVVCEDGNIVSDIRLSSFSLSGTIDVDSLQKLQGLRTISF ASNSFEGPIPPFNKLGALKALFLSSNKFSGKIPDDFFATMSSLKKVWLDGNQFTGKIPESVTSLRYLIELHLEANQFSGPIPPLKDPPSQLTSLDLSKNK LTGPIPETLSKFKASSFAANDGLCGPPLAIHCTDSESDDDDDDNKKEEETPSDDKSPPHPPPEAHSSGAAGVVALLIIIMAAAEVLGNGGLGSAYKATMP TVKLSVVVKRIREMNMLGRDLFDAEMRRFGRIRHDNILTPLAYHFRKEEKLLVSEYMPKGSLLYLMHGDRGICHSDLNWKTRLKIVKGIANGLSFLHSEY ASYNLPHGNLKSSNVLLSDTYEPLLGDYAMDPLVNPTHASQAMFAYKSPEYTLYSQVSHKSDVYCLGIIILEVMTGKFPSQYLTNGKGGTDVVQWVVEAS REGREKEVIDPEMVNNGTNSLENMVQLLQVGVACIETDSTQRLDMGEAIRRIDEIQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20690			Leucine-rich repeat protein ki...		Lus10005175 [exp]	0	1
AT1G68260			Thioesterase superfamily prote...		Lus10031936 [exp]	3.2	0.7105
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10018785 [exp]	6.9	0.7284
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004602 [exp]	10.0	0.6537
AT1G19880			Regulator of chromosome conden...		Lus10010614 [exp]	12.3	0.6370
					Lus10028940 [exp]	14.2	0.7139
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	14.7	0.7118
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Lus10043032 [exp]	15.8	0.5598
					Lus10038978 [exp]	17.4	0.7188
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013883 [exp]	18.7	0.6864
					Lus10031576 [exp]	19.9	0.5437

Compare expression of checked genes

Lus10005175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.