Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33240 966 / 0 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT3G14270 953 / 0 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G71010 616 / 0 FAB1C FORMS APLOID AND BINUCLEATE CELLS 1C (.1) AT1G34260 333 / 3e-93 FAB1D FORMS APLOID AND BINUCLEATE CELLS 1A (.1) AT1G77740 74 / 7e-13 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G10900 74 / 8e-13 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G60890 72 / 3e-12 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G21980 71 / 5e-12 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G09920 69 / 2e-11 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT3G07960 66 / 3e-10 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005173 [exp] 2697 / 0 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10038129 [exp] 1821 / 0 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10038127 [exp] 1306 / 0 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10035998 [exp] 463 / 3e-136 AT1G71010 1660 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Lus10016702 [exp] 456 / 7e-134 AT1G71010 1149 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Lus10028710 [exp] 385 / 2e-110 AT1G34260 1186 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Lus10006051 [exp] 372 / 9e-106 AT1G34260 1175 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Lus10029661 [exp] 72 / 3e-12 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10012689 [exp] 72 / 3e-12 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072300 [exp] 1027 / 0 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G163200 [exp] 989 / 0 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.008G128800 [exp] 479 / 1e-141 AT1G71010 1714 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Potri.010G113700 [exp] 476 / 1e-140 AT1G71010 1728 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Potri.013G116400 [exp] 425 / 3e-123 AT1G34260 1184 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Potri.019G087000 [exp] 408 / 2e-117 AT1G34260 1190 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Potri.003G019100 [exp] 76 / 3e-13 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.001G211200 [exp] 72 / 2e-12 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.019G015768 [exp] 70 / 1e-11 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 69 / 2e-11 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10005176 pacid=23163371 polypeptide=Lus10005176 locus=Lus10005176.g ID=Lus10005176.BGIv1.0 annot-version=v1.0 ATGCCTGATCAGAGCTGTAGGGTATGCTACGATTGTGATTCTCAGTTCACCGTATTTAACAGAAGACATCACTGCCGAGTCGGGTGCTGCCGAGTCTGTG GCCGGATTTTTTGTGCTAAGTGTACGTCAAATGCAGTTATCCACCCGTCTGATAAGCAAAAGACTTCTTGTGAAGACAAAGAGAGAGTGAGGGTCTGTAA TTATTGCTTCAAGCAGTATGAGGGTAATTGTTTAGCTATTGATAATGAGTCTAATGTGGCTGCTCCAGGCCTCAATTCATCACCTCCACCAATTTTGGCC AACACCAGTTCTAGCTCTACCTGTAACAGTAGTAGCAGCACAATTGGATCAGGTCCATATTCAACTGGGCCATACCATAGTTCTTCTCTGAGTCCTCAGA AGGCTGCACCAATGGATGCAGCAATTGTTGAGCAAGAATCTGAGGAATACGGAGGGAGTATAGAGCCCTCCAGAGCTGCATTTCATTCTTCCTCCACCCA GAATGCATATTGCATGAACAGCGGGCCAAGTGATGATGATGACGATGACGATGATGTTTGCTATGGTATCTACCATGCAGGCTTGCAGGGGAGGCATTTC TCTTATGTTGATGAATATTGTGGTTCTGCATCTGTTCATGACTTCGACCATGCATGTGGGATACATGATGTACATGACAGAGGAGACCTTGATGATGAGA TTGTAAGTTTTTCACCATTGGCCGAGGATTTTAATTCAAAGAGTGTGGATGGAATCGAGGGTAATACAGATGCCACTCCATATGACGTGGAGAATGAAGA TAATGAGCCTGTTGATTTTGAGAACAATGGTCTTCTTTGGCTACCTCCCGAACCAGAAGATGAAGAGGATGAAAGGGAAACTCCTTGGTTTGACGATGAT GAAGATGAAGAAGATGATGGGACTACAGGTGAGTGGGGGTATTTACGTCCTACCAATAGCTTTGGGAGCGGGGAACTTAGGAGCAAGGAAAAATCAAGCG AGGAGCACAGGAATGCTATGAAGAATGTGGTGGAAGGACACTTTAGAGCTTTAGTTGCACAGCTCTTACAAGTTGAAAACCTCCCCATTGGCGTGGATGA TGATAAAGCCGGTTGGCTGGATATAATTACTAATCTGTCATGGGAAGCAGCTGGTCATCTTAAACCAGATACAAGCAATGGTGGTGGAATGGATCCTGGT GGGTACGTGAAGGTTAAGTGCCTGGCTTGTGGGCGTCGCACTGAAAGCATGGTGGTGAAAGGAGTTGTTTGCAAAAAGAATGTTGCCCACCGGAGAATGA TGTCAAAAATAAATAAACCACGTTTTCTAATCCTTAGCGGTGCTTTGGAGTATCAGCGAGTTCCTAACCTTTTGTCAAGTGTTGATACGTTGCTTCAGCA GGAAAAGGATCATTTGAAGATGGCAGTTGCGGAGGGTGAAGCCCGTTGCACTGGTGCACAAATAGTACCTTCAGTTGATCATCTCACGGCTCAAAAGACA GGACACTGTGATTCATTCCATGTGGAGAAATTTTTTGAGGAGCATGGTAGCGCTGGCCAAGGAGGAAAGAAGCTGACCAAGACTCTAATGTATTTTGAGG GTTGTCCAAGACCTTTTGGTTGCACTATTTTGTTGAAAGGTGCCAGTGGGGATGAATTGAAAAAAGTAAAACATGTGGTACAGTATGGAGTTTTCGCAGC TTATCACCTAGCTCTGGAGACATCTTTCCTGGCAGATGAGGGTGCGACACTGCCAGAACTCCCTTTGAGGTCTCCACTGACTGTGGCACTACCTGATAAA TCAAGTATGGATAGATCCATTTCTGCTATACCTGGTTTCATAGTTTTGGGTGCTGAAAAGCCTGTGAGTCCTCAGACACCTGTTGAACTTGTGAAGTCTG ATATTGGGGAAGGGGACCTAAAGAAATCTGAGAATTGCATCACTGCTGATACAACATCTTCTACTATTGATAAACCTGCTTGTGCAAAAGAAGATGGTCA TTCGAATTGGTTGTCTGAAAATCATCCTTCTCAAACAGTGTTCCAAAATGTTGGGATAAATGGAAATGAAACTTCTCATTTGAGTTCAATTTCTCCATCT TTAATTGGGGATAACTTGTTGGATTCTCACAGTGACATACACCCAACTAATAATATCTCAGCGCTGTCCTATGGAAATGATTCTAAAGACCCTATGTTGG GTGAGGAAGAGGATGTTAATCCTTCTGCCACTGATATCCTCTTAGCATTTTCAAGTTTGCCTCAACAACAAGAAGTTGTCAGTAGCCATGCTAACAATGA TCTCTTGCTTAATAATGGTTATGTAACCCAAGGGTCCTTCAATAAAGATGGTATTGATCAGAATGAGGATATTGGTCCCTCAAAAGAGGATTTCCCTCCA TCACCTTCAGATCACCAGAGCATTCTGGTGTCAGCATCAACACGATGTGTTTGGAAGGGGACTGTATGTGAAAGGGCCCATCTTTGCAGGATTAAGTACT ATGGGAGCTTTGATAGGCCTCTCGGAAGTTTCTTGCGAGATCAGCTGTTTGATCAGAACTATCAATGCCATTCTTGTGAGATGCCATCAGAAGCACATGT TCACTGCTATATTCATCAACAAGGAAGCCTTACCATATCAGTTCGGAAGCTGCCCGAATTTCTTTTACCTGGGGAGAGAGAAGGGAAGATCTGGATGTGG CATAGGTGTCTTCGATGTCCTCGGATTAATGGTTTCCCACCTGCTACTCGCAGAGTGGTTATGTCTGATGCTGCCTGGGGCTTATCTTTTGGTAAGTTTT TAGAGCTTAGCTTTTCAAATCATGCAGCAGCAAGCAGGGTTGCGAGCTGTGGTCACTCTCTACACAGAGATTGTCTTCGATTCTATGGTTTTGGGAGAAT GGTTGCATGCTTCCGGTATGCTTCAATTAATGTTAACTCCGTTTGTCTGCCACCTTCAAAGCTTGAATTCAACTATGATGGTCAGGAGTGGATTCAGACA GAAGCAAACGAGGTACGACAAATGGCAGAACTTCTGTTTTCTGAAGTTAGGGCTGCTTTCCGTAAGGTTTTGGAGAAGGCTTCATCTGCTGGGTTAGATG ATGATGGTGTCAGGGCATCGTCAAGACTTCACAGTTTGGAGTTGGAACTAGCACTTCTGAAGGAAAAAGCAGAATTTGAGAAAATATTGATGAGGCAGGC TAATGTTGGCCAATCTGCTGATATCCTTGACCTTAACAGGTTAAGGAGGCAGATACTTTGTCATTCTTATGTTTGGGATCAATGGTTAATTAATCTAGCT AGTTCCAGTTTACTTAATGTTCAGGAAAGCCTGATGAGTTCCATTCCAGAATTGAAGGGGAAACGGATTGCGTCTGTTGAGAAGCTGAGTGAGGTGGACT CTTCAGACCCTGCATCTGCAAATGGTGCTCACTTCGGGTATAAGCCAATCACTGGAACAGGGATGCCACTTCCAGATTTTAACACTTCTTTTGATAGGAG TCCTTCGATTCCTAAAAATCTTATTCTTAACGACTACAATCCAGTTTATATTCCACTGTTGAAGGAAGTGGAACGGCAAAGTGGCGCTAGGCTGCTTCTG CCTGTAGGAGTTAATGATACAGTTGTACCTATATATGACGACGAGCCAACAAGCATTGTAGCATATGCTCTAGTCTCATTGGCTTATCAGGCCCAAATTT ATGAGCCTGAAGCCCCAAAAGATGCTGGGGACTCGATTCCTCAACATTTGGATTCTGTAAATCCTCTCTCTCGGTCATTTGATGACTCTATTTCTGATAC CCTTAAGAGTATTGGATCAATGGACGAGAGTATCCTATCATTGACTAGTTCCAGAAGTTCTCTGGTTTCGGACCTTGTTTCTCACACGAAGGATTTGCAT GCCAGAATTTCTTTCAATGCTGAGGGACCACTTGGTAAGGTGAAGTATACAGTAACATGTTACTATGCAAAGAGGTTCGAGGCTTTGAAAAACATCTGTT GCCCTAGTGATTTAGACTTCGTAAGATCTCTTAGTCGTTGTAAGAAGTGGGGAGCCCAGGGTGGCAAGAGCAATGTCTTCTTTGCTAAAACTCTGGATGA CCGGTTTATCATCAAGCAAGTTACAAAGACGGAGCTGGAGTCATTCATCAAGTTTGGACCTTCATATTTCAAGTACTTGACGGAATCAATTATTACCCGA AGCCCAACATGCTTGGCAAAGATCCTTGGAATATATCAGGTCTCAAAGCAGGTTAAAGGAGGAAAAGAAACCAAGATGGATATTCTAGTGATGGAGAATC TTCTATTCCGTCGAGATGTGACTCGACTTTATGACCTCAAAGGATCATCTCGGTCTCGTTATAATGCAGATACGAGCGGGAGCAACAAGGTTTTGCTGGA CCAAAACTTGATCGAAGCGATGCCAACATCTCCAATTTTTGTAGGGAACAAGGCAAAGAGGTTGCTAGAGAGAGCTGTATGGAATGATACTGCGTTTCTT GCTTCGATCGATGTAATGGACTACTCTCTACTGGTTGGAGTGGACGAGGGGAAACACGAGTTGGTACTTGGAATCATCGATTTCATGAGACAGTATACAT GGGACAAGCACCTGGAGACTTGGGTTAAGGCTTCAGGAATCCTTGGCGGGTCGAAGAACTCGATGCCAACTGTGATATCTCCCCAGCAGTACAAGAAACG GTTTAGGAAAGCCATGACTGCGTATTTTGTTATGGTTCCTGATCAGTGGTCTCCGACGACAATGATTGTACCGAGTGGCACCCAATCCGATGCTCCGAGT GGCACCCAATCCGATGCTGCTTTTGATGAAAACAGCTTTCAAGCTCACAGCGCTTCCAACGATTAA
AA sequence Show only first row Show all	>Lus10005176 pacid=23163371 polypeptide=Lus10005176 locus=Lus10005176.g ID=Lus10005176.BGIv1.0 annot-version=v1.0 MPDQSCRVCYDCDSQFTVFNRRHHCRVGCCRVCGRIFCAKCTSNAVIHPSDKQKTSCEDKERVRVCNYCFKQYEGNCLAIDNESNVAAPGLNSSPPPILA NTSSSSTCNSSSSTIGSGPYSTGPYHSSSLSPQKAAPMDAAIVEQESEEYGGSIEPSRAAFHSSSTQNAYCMNSGPSDDDDDDDDVCYGIYHAGLQGRHF SYVDEYCGSASVHDFDHACGIHDVHDRGDLDDEIVSFSPLAEDFNSKSVDGIEGNTDATPYDVENEDNEPVDFENNGLLWLPPEPEDEEDERETPWFDDD EDEEDDGTTGEWGYLRPTNSFGSGELRSKEKSSEEHRNAMKNVVEGHFRALVAQLLQVENLPIGVDDDKAGWLDIITNLSWEAAGHLKPDTSNGGGMDPG GYVKVKCLACGRRTESMVVKGVVCKKNVAHRRMMSKINKPRFLILSGALEYQRVPNLLSSVDTLLQQEKDHLKMAVAEGEARCTGAQIVPSVDHLTAQKT GHCDSFHVEKFFEEHGSAGQGGKKLTKTLMYFEGCPRPFGCTILLKGASGDELKKVKHVVQYGVFAAYHLALETSFLADEGATLPELPLRSPLTVALPDK SSMDRSISAIPGFIVLGAEKPVSPQTPVELVKSDIGEGDLKKSENCITADTTSSTIDKPACAKEDGHSNWLSENHPSQTVFQNVGINGNETSHLSSISPS LIGDNLLDSHSDIHPTNNISALSYGNDSKDPMLGEEEDVNPSATDILLAFSSLPQQQEVVSSHANNDLLLNNGYVTQGSFNKDGIDQNEDIGPSKEDFPP SPSDHQSILVSASTRCVWKGTVCERAHLCRIKYYGSFDRPLGSFLRDQLFDQNYQCHSCEMPSEAHVHCYIHQQGSLTISVRKLPEFLLPGEREGKIWMW HRCLRCPRINGFPPATRRVVMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGFGRMVACFRYASINVNSVCLPPSKLEFNYDGQEWIQT EANEVRQMAELLFSEVRAAFRKVLEKASSAGLDDDGVRASSRLHSLELELALLKEKAEFEKILMRQANVGQSADILDLNRLRRQILCHSYVWDQWLINLA SSSLLNVQESLMSSIPELKGKRIASVEKLSEVDSSDPASANGAHFGYKPITGTGMPLPDFNTSFDRSPSIPKNLILNDYNPVYIPLLKEVERQSGARLLL PVGVNDTVVPIYDDEPTSIVAYALVSLAYQAQIYEPEAPKDAGDSIPQHLDSVNPLSRSFDDSISDTLKSIGSMDESILSLTSSRSSLVSDLVSHTKDLH ARISFNAEGPLGKVKYTVTCYYAKRFEALKNICCPSDLDFVRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFGPSYFKYLTESIITR SPTCLAKILGIYQVSKQVKGGKETKMDILVMENLLFRRDVTRLYDLKGSSRSRYNADTSGSNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTAFL ASIDVMDYSLLVGVDEGKHELVLGIIDFMRQYTWDKHLETWVKASGILGGSKNSMPTVISPQQYKKRFRKAMTAYFVMVPDQWSPTTMIVPSGTQSDAPS GTQSDAAFDENSFQAHSASND

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005176 [exp]	0	1
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Lus10038129 [exp]	1.0	0.9268
AT4G30790			unknown protein		Lus10007700 [exp]	1.4	0.8831
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	3.5	0.8459
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	6.2	0.8525
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	6.3	0.8459
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	8.4	0.8439
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10025239 [exp]	8.9	0.8215
AT3G62900			CW-type Zinc Finger (.1)		Lus10040919 [exp]	11.0	0.8467
AT3G48195			Phox (PX) domain-containing pr...		Lus10042108 [exp]	13.3	0.8193
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	14.0	0.8108

Compare expression of checked genes

Lus10005176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.