Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19250 744 / 0 FMO1 flavin-dependent monooxygenase 1 (.1) AT5G45180 592 / 0 Flavin-binding monooxygenase family protein (.1) AT1G21430 86 / 4e-18 YUC11 Flavin-binding monooxygenase family protein (.1) AT4G28720 84 / 4e-17 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G61290 79 / 2e-15 Flavin-binding monooxygenase family protein (.1) AT2G33230 77 / 4e-15 YUC7 YUCCA 7 (.1) AT5G07800 77 / 6e-15 Flavin-binding monooxygenase family protein (.1) AT1G48910 77 / 7e-15 YUC10 YUCCA 10, Flavin-containing monooxygenase family protein (.1) AT1G04180 75 / 4e-14 YUC9 YUCCA 9 (.1) AT5G43890 73 / 2e-13 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038126 [exp] 1027 / 0 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10020001 [exp] 840 / 0 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10023940 [exp] 404 / 3e-136 AT1G19250 399 / 3e-134 flavin-dependent monooxygenase 1 (.1) Lus10013230 [exp] 337 / 4e-110 AT1G19250 341 / 2e-111 flavin-dependent monooxygenase 1 (.1) Lus10023941 [exp] 249 / 3e-78 AT1G19250 241 / 2e-75 flavin-dependent monooxygenase 1 (.1) Lus10023942 [exp] 211 / 2e-63 AT5G45180 215 / 4e-65 Flavin-binding monooxygenase family protein (.1) Lus10014439 [exp] 212 / 8e-63 AT1G19250 209 / 1e-61 flavin-dependent monooxygenase 1 (.1) Lus10015529 [exp] 194 / 1e-56 AT4G30270 346 / 6e-119 SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) Lus10030750 [exp] 113 / 5e-28 AT1G19250 148 / 5e-41 flavin-dependent monooxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G137600 [exp] 805 / 0 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.001G335900 [exp] 725 / 0 AT1G19250 630 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.009G143500 [exp] 406 / 5e-137 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 382 / 2e-127 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 382 / 2e-127 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.005G250600 [exp] 342 / 5e-112 AT1G19250 330 / 4e-107 flavin-dependent monooxygenase 1 (.1) Potri.006G060300 [exp] 293 / 1e-94 AT1G19250 285 / 3e-91 flavin-dependent monooxygenase 1 (.1) Potri.012G067500 [exp] 85 / 2e-17 AT5G07800 696 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.010G062400 [exp] 77 / 6e-15 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.002G254200 [exp] 77 / 7e-15 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10005178 pacid=23163361 polypeptide=Lus10005178 locus=Lus10005178.g ID=Lus10005178.BGIv1.0 annot-version=v1.0 ATGGCTAGCCAAAAGGGAAAAATATCATCATGTAACAAAGTAGGAATCATAGGGGCTGGGGTGAGTGGGCTAGCCGCTTCGAAACAGCTTGCCCACTACC ATCCTACGGTATTCGAGGCCACCGACTCCCTCGGAGGAGTATGGAAAACCTGCTCCTACAGTTCCACAAAGCTCCAATCCCCACGCAAACAGTATGAGTT TTCCGACTTCCCTTGGCCCAATAGGGACGACCCTACCTTCCCCTCTCACCTCGAGATTTTGGATTACTTAACGTCTTATGCTCAACGATTTGATCTCATC AAGTATGTCAAGTTTAACACCAAGGTTGTCGAGATCAGGTTTATCGGTGATGATCGAACAACTGCCTCTGGTGAGTACGAAGACCTTCTTACAGGACAAC CCGTTTGGGAGGTTGCAGTCCGAACCGACGAGTCTGACACCATTGAGTGGCATCAATTCGAAATGTTGGTTGTATGCACCGGAAGATACGGAGACGTACC AAAAAGGCCAGAATACCCGAGGAATAGAGGCCCAGAAATATTCAAGGGAAAGGTGATGCATTCTATGGATTACTGCAAACTGGATAAGGAAGAAGCAACA GAGCTGATGAAAGGCAAGAATGTTGCAATCATTGGATTCAGAAAATCGGCTATTGATTTAGCTGTTGAATGCGCTCAAGCAAACCAAGGTCCAGAAGGGA AACCATGCACAATGGTGATAAGAACACTACACTGGACCGTCCCACATTACTGGGTATGGGGATTGCCATTTTTCTTATTCTTTTCGACAAGATCCTCCCA ATTCATCAATCAACGCCCCAATCAAAACCTTCTCAGGACCTTCATCTGCATTCTCTTTTCTCCACTGAGACATGCAATTTCTGCCTTCATAGAATCTTAC TTGCTTCACAAGCTTCCACTGGAGAAATATGGTTTGAGGCCTCAGCATCCTTTTATTGAAGACTATGCGTCTTGCCAGATGGCAATCACCCCTGAAGAAT TCTTCCCAGAGGCAGAAAAGGGGAACATCATGTTCAAGAATATGTCAGCATCAAAATGGTGGTTCTCTAGTGACGGACTCGAATTTGATGACAAAACCAA CCTAAAAGCTGATGTTGTCATCTTAGCAACTGGGTATGATGGCAAGAAGAAGCTCAAAGATATCATTCCACAACCCTTTCGTAGCTTCCTCGACTACCCT TCTGGTTTCATACCCTTATACAGAGGAACGATAAACCCACTGATACCCAACATGGGTTTTCTTGGATACGTAGAGAGTGTTTCCAACCTTCACACTGCAG AGCTGCGTAGCATATGGCTGGCACGACTAGCTGACAAGAAGTTCAAACTCCCAACAGTGATGAAGATGTGCGACCAAATATCTGAAGAAATCGAAACCAT GAAGAAGACAACAAGGTTTTATAAAAGGCATTGCATTTCCACTTTTAGCATCAACCACAGTGATGAGATATGTGAAGAAATGGGATGGAGCTCATGGAGA AAGAAACATTTTCTAGCCGAGGCATTGAGTCCTTACGGTAGTGAGGACTACAAACAACACTGA
AA sequence Show only first row Show all	>Lus10005178 pacid=23163361 polypeptide=Lus10005178 locus=Lus10005178.g ID=Lus10005178.BGIv1.0 annot-version=v1.0 MASQKGKISSCNKVGIIGAGVSGLAASKQLAHYHPTVFEATDSLGGVWKTCSYSSTKLQSPRKQYEFSDFPWPNRDDPTFPSHLEILDYLTSYAQRFDLI KYVKFNTKVVEIRFIGDDRTTASGEYEDLLTGQPVWEVAVRTDESDTIEWHQFEMLVVCTGRYGDVPKRPEYPRNRGPEIFKGKVMHSMDYCKLDKEEAT ELMKGKNVAIIGFRKSAIDLAVECAQANQGPEGKPCTMVIRTLHWTVPHYWVWGLPFFLFFSTRSSQFINQRPNQNLLRTFICILFSPLRHAISAFIESY LLHKLPLEKYGLRPQHPFIEDYASCQMAITPEEFFPEAEKGNIMFKNMSASKWWFSSDGLEFDDKTNLKADVVILATGYDGKKKLKDIIPQPFRSFLDYP SGFIPLYRGTINPLIPNMGFLGYVESVSNLHTAELRSIWLARLADKKFKLPTVMKMCDQISEEIETMKKTTRFYKRHCISTFSINHSDEICEEMGWSSWR KKHFLAEALSPYGSEDYKQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10005178 [exp]	0	1
					Lus10028109 [exp]	2.2	0.8556
					Lus10011908 [exp]	3.2	0.8274
AT1G06330			Heavy metal transport/detoxifi...		Lus10013911 [exp]	3.5	0.8419
					Lus10039764 [exp]	7.3	0.8256
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005739 [exp]	7.5	0.7537
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10026496 [exp]	8.0	0.8521
					Lus10026438 [exp]	8.2	0.7622
AT3G04620		DAN1	D NUCLDUO1-ACTIVATEEIC ACID BI...		Lus10005531 [exp]	8.9	0.8332
					Lus10024480 [exp]	11.5	0.7921
AT3G57990			unknown protein		Lus10000401 [exp]	12.5	0.7417

Compare expression of checked genes

Lus10005178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.