Gene [FLAX] | FIBexDB

Lus10005179 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10002249 [exp]	290 / 3e-89	AT5G36930	286 / 2e-80	Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Lus10004719 [exp]	203 / 4e-58	AT5G36930	384 / 3e-113	Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Lus10000738 [exp]	202 / 4e-58	AT5G36930	191 / 7e-50	Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Lus10008516 [exp]	196 / 3e-57	AT4G27220	59 / 1e-08	NB-ARC domain-containing disease resistance protein (.1)
Lus10002248 [exp]	190 / 2e-56	AT5G40060	42 / 0.001	Disease resistance protein (NBS-LRR class) family (.1)
Lus10002247 [exp]	191 / 4e-54	AT5G36930	363 / 1e-108	Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Lus10008519 [exp]	182 / 1e-50	AT1G27180	344 / 2e-98	disease resistance protein (TIR-NBS-LRR class), putative (.1)
Lus10007790 [exp]	155 / 1e-41	AT5G36930	343 / 4e-99	Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Lus10008526 [exp]	152 / 2e-40	AT5G36930	361 / 5e-106	Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)

Poplar homologues

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No hit found

PFAM info

Representative CDS sequence

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>Lus10005179 pacid=23163372 polypeptide=Lus10005179 locus=Lus10005179.g ID=Lus10005179.BGIv1.0 annot-version=v1.0

ATGGGAGTAAATTCAAAATATACAGAAGATAACTGGGGAACCTTTGGCATGTTGATCGGACTTAGAGAGCTTCATCTTTACTACTACAGGTGCACAAATT

TGAGAGAAGTAGTTGCTGATGTTGGTCAATTTTCGTCTCTCAAAATCTTACGCGGAGCTAAAGTGGCCATGTACGAATTCCCATTAGGTTTGAAGAAGTT

ATCCACTTCATCCCGCATTTCGAATCTATCAAAGTTGTTGGATTTGGAGGTATTGGGTGTTTTTGATTGTGAAGATGGAATCCACGTCCCTTTTGCTAGA

ATGAGTGAAGATGAAGCCAGCGTGTGGTGGCAGATATCCAAGTTGAAGTCCTTGAAACTCACAAAGACAAAAATCAATATCCATGTTGTGGGTGCTTCTT

CTAGTGATGATCGTTGTTTACTTCCATCGTCGCTAACCTATCTTAGAATTAGACAATGTCAAGAACCAACGTGGCTACCAGGAATGGAGAACTTGGAGAA

TTTGACTTATCTGGAAGTCTACGACGTCTTTCAACCTCTTGGTGGTGATTTGGATGGGCTACAAGGGTTGAGATCGTTGCAAACTCTTATTATTCAACAA

GACGAGGATTTTGAGGGGCATGGAACCCTGGAAGAGTTGGTTTCTTTGGAGTTAGAGTTAGACTATACATCTTCTTTGGAGAGGATAGCTTCCTTGTCAA

AGCTGCAAAAGTTAGGGACATTACAGGTGGATGTGCCGAGTTTGCGGGAGATTGAAGGGCTTGGAGAGTTGAAGTCTTTACAAAGTTTGGATCTAGATGG

TTGTGAATCGTTGGAGAGACTATCGCCTGATCAACAGGTATGTAGTCTGGAGAAGATGGAGATGCTCAGCATCCATAACTGCGGAAGCTTGAGTGGTGAT

CATCTCTCTGCCCTCAAGACCAGTCTACCGCCGGATGTATGCATAATCTGGCCCGACGGACGAAGACGAAGGAATTTGAATCCTTGTGGATCAAGCGGTC

GCAACCTAAATAAGGGGATACTCAGATCAACAACATTGTCCACCCTAGGCCACCGTGGCTGA

AA sequence

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>Lus10005179 pacid=23163372 polypeptide=Lus10005179 locus=Lus10005179.g ID=Lus10005179.BGIv1.0 annot-version=v1.0

MGVNSKYTEDNWGTFGMLIGLRELHLYYYRCTNLREVVADVGQFSSLKILRGAKVAMYEFPLGLKKLSTSSRISNLSKLLDLEVLGVFDCEDGIHVPFAR

MSEDEASVWWQISKLKSLKLTKTKINIHVVGASSSDDRCLLPSSLTYLRIRQCQEPTWLPGMENLENLTYLEVYDVFQPLGGDLDGLQGLRSLQTLIIQQ

DEDFEGHGTLEELVSLELELDYTSSLERIASLSKLQKLGTLQVDVPSLREIEGLGELKSLQSLDLDGCESLERLSPDQQVCSLEKMEMLSIHNCGSLSGD

HLSALKTSLPPDVCIIWPDGRRRRNLNPCGSSGRNLNKGILRSTTLSTLGHRG

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44670			Disease resistance protein (TI...		Lus10005179 [exp]	0	1

Lus10005179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.