Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54600 246 / 4e-83 Translation protein SH3-like family protein (.1.2) AT5G23535 71 / 2e-15 KOW domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038125 [exp] 356 / 6e-126 AT5G54600 246 / 6e-83 Translation protein SH3-like family protein (.1.2) Lus10006905 [exp] 71 / 2e-15 AT5G23535 280 / 3e-98 KOW domain-containing protein (.1) Lus10022069 [exp] 71 / 5e-15 AT5G23535 284 / 5e-100 KOW domain-containing protein (.1) Lus10042614 [exp] 71 / 5e-15 AT5G23535 286 / 6e-101 KOW domain-containing protein (.1) Lus10014683 [exp] 49 / 1e-06 AT2G48140 145 / 6e-43 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415400 [exp] 289 / 4e-100 AT5G54600 243 / 2e-82 Translation protein SH3-like family protein (.1.2) Potri.004G062600 [exp] 69 / 2e-14 AT5G23535 254 / 6e-88 KOW domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF00467 [flax] [poplar] KOW KOW motif
Representative CDS sequence Show only first row Show all	>Lus10005180 pacid=23163358 polypeptide=Lus10005180 locus=Lus10005180.g ID=Lus10005180.BGIv1.0 annot-version=v1.0 ATGGCAGCCATAGCTGGACTTCAATCCTCCATGGCTTCGCTTTCTATATCCCCAAGATCGTTCTTCGGAGACCGCCTTTCGGTTCCGTCTATCTCTCCTT TCACGGTCAAGTTACCAAACAAGCCATGTCTCATTGTTGCAAAGTTAAAGCGATGGGAACGGAAGGAATGCAAACCAAACAGCCTTCCTGTTTTACATAA AATGCACGTAAAGGTCGGTGATACAGTGAAACTGATCACTGGAGATGATAAAGGAAAAGTTGGAGAAATTACAAAGATTTTCAGGCACAACAGCACTGTG ATCGTCAAGGATATCAACTTAAAAACTAAGCATATGAAGAGCAAAGAGCAGGATGAACCTGGCCAAATCATTAAGATTGAGGCACCCGTTCATAGTTCAA ACGTAATGGTGTACTCAAAAGAGAAGAATATAGCAAGCAGGGTGGGTCATAAAGTGCTGGAAGATGGGTCCCGAGTGCGGTACCTGATCAAAACGGGTGA GGTAATTGACAGTGCAGAGAACTGGAAGAAACTCAAGGAAGAGAGCCAGACGGTCGAGAAAACTGAAATAAGAGGAGTATACACCTGGCTTCCATTCAAT GGAGATCAAAAGGAGTGGTTCCCTTTATCGAAGCTGGTGTCTCCATTCACCGCTTCATATCGAAAGCCAAGAGCTAACAAGTAA
AA sequence Show only first row Show all	>Lus10005180 pacid=23163358 polypeptide=Lus10005180 locus=Lus10005180.g ID=Lus10005180.BGIv1.0 annot-version=v1.0 MAAIAGLQSSMASLSISPRSFFGDRLSVPSISPFTVKLPNKPCLIVAKLKRWERKECKPNSLPVLHKMHVKVGDTVKLITGDDKGKVGEITKIFRHNSTV IVKDINLKTKHMKSKEQDEPGQIIKIEAPVHSSNVMVYSKEKNIASRVGHKVLEDGSRVRYLIKTGEVIDSAENWKKLKEESQTVEKTEIRGVYTWLPFN GDQKEWFPLSKLVSPFTASYRKPRANK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54600			Translation protein SH3-like f...		Lus10005180 [exp]	0	1
AT4G34620		SSR16	small subunit ribosomal protei...		Lus10027058 [exp]	1.4	0.9862
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	2.0	0.9844
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10037629 [exp]	3.0	0.9773
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10010639 [exp]	4.2	0.9824
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10041346 [exp]	4.5	0.9794
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	4.9	0.9812
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10001861 [exp]	4.9	0.9782
AT4G34620		SSR16	small subunit ribosomal protei...		Lus10025592 [exp]	5.7	0.9742
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Lus10043055 [exp]	6.3	0.9774
AT5G14910			Heavy metal transport/detoxifi...		Lus10014520 [exp]	6.5	0.9777

Compare expression of checked genes

Lus10005180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.