Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43210 1134 / 0 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT1G18370 971 / 0 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT5G66310 439 / 5e-138 ATP binding microtubule motor family protein (.1) AT4G24170 437 / 6e-138 ATP binding microtubule motor family protein (.1) AT4G38950 431 / 2e-137 ATP binding microtubule motor family protein (.1.2) AT2G21300 429 / 2e-136 ATP binding microtubule motor family protein (.1.2) AT3G51150 432 / 1e-135 ATP binding microtubule motor family protein (.1.2) AT3G12020 288 / 4e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G59540 276 / 7e-80 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G42490 280 / 2e-79 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032452 [exp] 949 / 0 AT1G18370 1452 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10042952 [exp] 748 / 0 AT1G18370 1206 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10015448 [exp] 425 / 1e-139 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10033920 [exp] 434 / 5e-137 AT3G51150 578 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10035471 [exp] 432 / 5e-137 AT2G21300 1011 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10031086 [exp] 432 / 8e-137 AT2G21300 1026 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10014268 [exp] 432 / 3e-135 AT5G66310 667 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025969 [exp] 432 / 4e-135 AT3G51150 694 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10010624 [exp] 429 / 4e-135 AT3G51150 577 / 0.0 ATP binding microtubule motor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G136600 [exp] 1287 / 0 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.012G054400 [exp] 993 / 0 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.015G044600 [exp] 978 / 0 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.002G027600 [exp] 452 / 1e-144 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.004G162800 [exp] 446 / 2e-141 AT2G21300 1031 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.007G014800 [exp] 445 / 7e-141 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.009G124500 [exp] 445 / 7e-141 AT2G21300 752 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.005G116900 [exp] 442 / 1e-139 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.016G060400 [exp] 286 / 6e-82 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G013300 [exp] 281 / 3e-81 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0023 [flax] [poplar] PF11995 [flax] [poplar] DUF3490 Domain of unknown function (DUF3490)
Representative CDS sequence Show only first row Show all	>Lus10005181 pacid=23163375 polypeptide=Lus10005181 locus=Lus10005181.g ID=Lus10005181.BGIv1.0 annot-version=v1.0 ATGGTTGGGACTCCGGCAACACCAGCGTCGAGAGTACGAAGACGTTTGCCGACAGCTGAAGAGGAGAAGATTTTAGTCACAGTAAGAGTACGGCCTTTGA GCAGAAGAGAGCAATCGATGTATGATCTAATTGCTTGGGATTGTCCCGATCGGCAGACCATTATCCTGAAGAATCCAAACACAGAGCGTCCATCTGCACC CTACACATTCGATAAAGTTTTTGATCCTAATTCTATCACTCAGAAGGTCTATGAAGAGGGAGCTAAACGTGTTGCTTTGTCAGCCCTTACTGGAATTAAC GCCACAATCTTCGCCTATGGGCAAACCAGTAGCGGCAAGACGTTTACTATGAGAGGGATTACAGACCTTGCAATCAACGATATCTTTCACCATATTGCAC AGATTCGACAAAGGGAATTCAGATTAAAAATATCGGCCTTGGAAATTTACAATGAGACTGTGGTAGATCTCCTGAACCGTGCATCTGGTCCCCTTCGGCT TCTGGATGATCATGAGAAAGGGGTCATTGTTGAAAAGCTAGTTGAAGAAGTGGTCAAGGACAGCCAACATCTGAGACAGTTAATTGGAATCTGTGAAGCA CAAAGGCAAGTTGGAGAAACAGCGCTTAATGATCAGAGCTCAAGATCGCATCAAATTATACGACTGACAATTGAGAGCACGTTACGGGATAAGTCGGCGC GCGTTGAATCGTTCTTAGCAAGCTTGAATCTGGTGGACCTTGCTGGAAGTGAACGCGCATCTCAAACAAATGTAGATGGTACAAGATTGAAAGAAGGTAG TCATATAAATCGTAGCTTGCTGACACTCACTACAGTTATCCGGAAGCTAAGTGAAGGAAGGAGAAGTGGTCATGTACCGTACAGAGATTCAAAGCTCACA AGGATTTTGCAGCATTCATTGGGTGGTAATGCACGCACGGCAATAATCTGTACAATCAGTCCTGCCTTGAGTCATGTGGAGCAAACAAGAAATACACTAC TGTTTGCTACTAGTGCGAAGGAAGTAACGAACAATGCTCAAGTGAACATGGTTATTTCAGAAAAAAGTTTAGTAAAACATTTGCAGCAAGAAGTGGTCAG ACTTGCGTCAGAGCTCCAAACTCCTGAACCTTCTTCTGTCTCACAAATGAAAAAGAGTCTACTGCAGAAGAACCTGAAAATCGACGAGTTAGAGAACGAA ATAAAAGAGCTCAAGAGGGAGAGGGATCTTGCACAATCTCAACTTGAACTTGAAAGAAAATCACGCAAGGAATTGAAGGGAATAAACCAAAGTGGGCCAT CTTCACAAATTTTCAGAAAAGGTGGGACACTGTCAGCAGAGGGGCGAGAATTTAGTGCAATCGGCAGGCATGGTGCTGTGAGGAAGTCTGTCACTTCCAA CGATCCAATCATGCTTGTTCAGGAAATACGGAAACTTGAGCAGCAGCAGAAACAACTTGGAGAAGAAGCAAACCAAGCCTTGGAAATGCTTCACAAAGAA GTTGCTTCCCAGAGAATGGGGAGCCAAGCAACTGCCGAAACTATAGCAAAGATGTTATCAGAAATCAAGAGCATGCATGTTGCTGGCTTTGCTCACGAGG AAACTGTGTTTGGACAGAATGGTAGCCTGAAAGATGAGCTTTATCGGTTGGACTTACAAGAAACCACCATTGTGTCTTTAGAGAAGAAACTTGAAACTGT TCAGAAGTCCATAGACATGCTGGTTTGCTCATTCTCTAGTGCCGACGAGACTCCTGAAGCAAAGGCAGAACTGAGGAAGAAAAAGGGGTTACCTTTCGCC TTAAATACGAGCTCCAATGTACAACATCTAATACGTTCTCCTTGTTCACCATTGTCCTCTTCTCACGGGGCAGTGGGTAATGATTCTGAGAACAAAGACC CCAAGAAAAGTGTTGCAGTTGAATGGACCCCATCAAAGGCTGTACACAATGGATACGTTGCGTCTAAGGAAGAAACACCATCTTCTAGGTCATCAAAGTC AGTTACTGTGAAGAAAATGCAGAAATTGTTCAAGAATGCAGCAGAAGAAAACATAAGGAGCATCAGAGCTTATGTAACTGAGTTGAAAGAAAGGGTGGCT AAGCTTCAATACCAAAAGCAGCTTTTGGTTTGCCAGGTGCTGGAGCTTGAAGGAAACGAGGTGACAGCATTGGAGACAGATGATGTGGAAGAATCTCCAA TTTCATGGCACCTAGTGTTTGAGGAACAAAGGAAGCAGATAATCATGCTGTGGCATCTGTGCCATGTTTCCATCATACACCGAACGCAGTTCTATTTGTT GTTCAAGGGAGAGCCAAGCGATCAGATATATGTGGAAGTTGAACTCAACAGACTGACATGGCTAGAGCAGCATTTTGCAGAGCTAGGGAATGCTAGCCCA GCATTATTGGGTGATGAGCCTGCTGGCTCGGTGTCTCAAAGTATAAAGGCTCTGAGGCAAGAAAGGGAGTATCTAGCGAGAAGGGTAAGCTCAAAGCTGG GAGCAGAAGAAAGGGAAATGCTGTATGAAAAATGGGAGATCCCACCAGGAGGGAAGCAGAGGAGGTTGCAGATGGTAAACAAGCTGTGGACAGATCCCTT GGACATGCAAAATGTGCGAGAGAGTGCGGATGTCGTAGCTAAGCTCGTAGGTTTCTGCGAATCCGAAGGCGATGTGAGGAAGGAGATGTTTGCTCTCAAT CTTGTAAACCCGTCTGATAAGAAGTCGTGGATGGGCTGGAACTTCATATCCAACCTTCTCAACTTTTAG
AA sequence Show only first row Show all	>Lus10005181 pacid=23163375 polypeptide=Lus10005181 locus=Lus10005181.g ID=Lus10005181.BGIv1.0 annot-version=v1.0 MVGTPATPASRVRRRLPTAEEEKILVTVRVRPLSRREQSMYDLIAWDCPDRQTIILKNPNTERPSAPYTFDKVFDPNSITQKVYEEGAKRVALSALTGIN ATIFAYGQTSSGKTFTMRGITDLAINDIFHHIAQIRQREFRLKISALEIYNETVVDLLNRASGPLRLLDDHEKGVIVEKLVEEVVKDSQHLRQLIGICEA QRQVGETALNDQSSRSHQIIRLTIESTLRDKSARVESFLASLNLVDLAGSERASQTNVDGTRLKEGSHINRSLLTLTTVIRKLSEGRRSGHVPYRDSKLT RILQHSLGGNARTAIICTISPALSHVEQTRNTLLFATSAKEVTNNAQVNMVISEKSLVKHLQQEVVRLASELQTPEPSSVSQMKKSLLQKNLKIDELENE IKELKRERDLAQSQLELERKSRKELKGINQSGPSSQIFRKGGTLSAEGREFSAIGRHGAVRKSVTSNDPIMLVQEIRKLEQQQKQLGEEANQALEMLHKE VASQRMGSQATAETIAKMLSEIKSMHVAGFAHEETVFGQNGSLKDELYRLDLQETTIVSLEKKLETVQKSIDMLVCSFSSADETPEAKAELRKKKGLPFA LNTSSNVQHLIRSPCSPLSSSHGAVGNDSENKDPKKSVAVEWTPSKAVHNGYVASKEETPSSRSSKSVTVKKMQKLFKNAAEENIRSIRAYVTELKERVA KLQYQKQLLVCQVLELEGNEVTALETDDVEESPISWHLVFEEQRKQIIMLWHLCHVSIIHRTQFYLLFKGEPSDQIYVEVELNRLTWLEQHFAELGNASP ALLGDEPAGSVSQSIKALRQEREYLARRVSSKLGAEEREMLYEKWEIPPGGKQRRLQMVNKLWTDPLDMQNVRESADVVAKLVGFCESEGDVRKEMFALN LVNPSDKKSWMGWNFISNLLNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43210		TES, ATNACK2	TETRASPORE, ARABIDOPSIS NPK1-A...		Lus10005181 [exp]	0	1
AT4G35560		DAW1	DUO1-activated WD40 1, Transdu...		Lus10035989 [exp]	3.7	0.8092
AT3G54710		ATCDT1B, CDT1B,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10040505 [exp]	8.5	0.8007
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10023105 [exp]	8.9	0.8051
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10016423 [exp]	10.2	0.8158
AT3G63240			DNAse I-like superfamily prote...		Lus10042619 [exp]	12.2	0.7778
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10034828 [exp]	12.5	0.8099
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	17.6	0.8002
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10014952 [exp]	23.0	0.7804
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10022338 [exp]	23.6	0.8220
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029594 [exp]	23.6	0.7910

Compare expression of checked genes

Lus10005181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.