Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19110 176 / 3e-54 Protein kinase superfamily protein (.1.2.3) AT5G45430 168 / 8e-51 Protein kinase superfamily protein (.1.2) AT4G13020 118 / 2e-32 MHK Protein kinase superfamily protein (.1.2.3.4.5) AT1G53570 61 / 1e-11 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G01560 55 / 1e-09 ATMPK11 MAP kinase 11 (.1.2) AT4G11330 53 / 8e-09 ATMPK5 MAP kinase 5 (.1) AT4G26890 53 / 9e-09 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT4G12020 52 / 1e-08 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT4G36450 52 / 1e-08 ATMPK14 mitogen-activated protein kinase 14 (.1) AT5G63370 52 / 2e-08 CDKG;1 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038123 [exp] 204 / 3e-64 AT4G19110 555 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10008303 [exp] 181 / 2e-55 AT4G19110 616 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033278 [exp] 175 / 4e-53 AT4G19110 620 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10003155 [exp] 119 / 2e-32 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Lus10007921 [exp] 55 / 2e-09 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10036384 [exp] 54 / 3e-09 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 54 / 3e-09 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 54 / 4e-09 AT4G01370 630 / 0.0 MAP kinase 4 (.1) Lus10038858 [exp] 54 / 5e-09 AT1G63700 668 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G101600 [exp] 183 / 1e-56 AT4G19110 689 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.003G190200 [exp] 144 / 4e-42 AT4G19110 508 / 5e-179 Protein kinase superfamily protein (.1.2.3) Potri.010G154400 [exp] 140 / 2e-41 AT4G19110 451 / 4e-158 Protein kinase superfamily protein (.1.2.3) Potri.016G012801 [exp] 140 / 5e-41 AT4G19110 452 / 3e-158 Protein kinase superfamily protein (.1.2.3) Potri.001G035400 [exp] 122 / 2e-35 AT4G19110 306 / 9e-104 Protein kinase superfamily protein (.1.2.3) Potri.002G247500 [exp] 115 / 2e-31 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Potri.014G088500 [exp] 54 / 4e-09 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.002G003400 [exp] 53 / 9e-09 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.018G083300 [exp] 52 / 2e-08 AT4G28980 640 / 0.0 CYCLIN-DEPENDENT KINASE F;1, CDK-activating kinase 1AT (.1.2) Potri.009G066100 [exp] 51 / 3e-08 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005183 pacid=23163360 polypeptide=Lus10005183 locus=Lus10005183.g ID=Lus10005183.BGIv1.0 annot-version=v1.0 ATGCAAGAAGTTGGTGATGGAGCATTTGGGACCGTCTGGCGAGCAATAAACAAGCAGACGGGTGAAGTTGAATGCAACTTGTACCATCTGATCAAAGATA GGTCTAAGCTATTCTCAGAAGCTGAAATCAGAGATTGGTGTTTTCAAATATTTCAAGGTCTAGCTTATATGCATCAGCGTGGCTACTTTCATCGTGATCT AAAGCCTGATATCTGGGCAATGGGTGCCATAATGGCTGAATTATTTACCCTCAGGCCTCTTTTTCCCGGTACCAGTTTCCCGGCGTGCACCTCTCTGATA CCATCAGCAAGTGATGATGCGATAAATCTTATTACATCTCTCTGTATGTGGGATCCAAGCAAAAGGCCAACAGCTGCAGAGGCACTTCAGCATCCTTTCT TCCAAGCGGTGAGGGTTCAGCTCTGA
AA sequence Show only first row Show all	>Lus10005183 pacid=23163360 polypeptide=Lus10005183 locus=Lus10005183.g ID=Lus10005183.BGIv1.0 annot-version=v1.0 MQEVGDGAFGTVWRAINKQTGEVECNLYHLIKDRSKLFSEAEIRDWCFQIFQGLAYMHQRGYFHRDLKPDIWAMGAIMAELFTLRPLFPGTSFPACTSLI PSASDDAINLITSLCMWDPSKRPTAAEALQHPFFQAVRVQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19110			Protein kinase superfamily pro...		Lus10005183 [exp]	0	1
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001101 [exp]	16.3	0.8044
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10037246 [exp]	29.4	0.7831
					Lus10031222 [exp]	38.2	0.7152
AT5G06560			Protein of unknown function, D...		Lus10015990 [exp]	38.6	0.7452
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	41.7	0.7757
AT2G14255			Ankyrin repeat family protein ...		Lus10000132 [exp]	46.3	0.7093
AT3G04490			unknown protein		Lus10022024 [exp]	48.0	0.7665
					Lus10001309 [exp]	51.1	0.7614
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10002528 [exp]	58.5	0.7553
AT1G58230			binding (.1)		Lus10042866 [exp]	62.0	0.7598

Compare expression of checked genes

Lus10005183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.