Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35200 607 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 398 / 1e-132 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 392 / 9e-130 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 390 / 4e-128 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 387 / 1e-127 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 202 / 1e-57 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 187 / 9e-52 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 186 / 4e-51 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 185 / 6e-51 ENTH/ANTH/VHS superfamily protein (.1.2) AT2G25430 144 / 1e-36 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038122 [exp] 909 / 0 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 422 / 1e-141 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 419 / 2e-140 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 416 / 5e-139 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 422 / 1e-138 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 403 / 4e-134 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10003642 [exp] 347 / 6e-113 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10015335 [exp] 237 / 1e-69 AT4G25940 385 / 6e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 186 / 1e-50 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G125284 [exp] 729 / 0 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 727 / 0 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 708 / 0 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 426 / 2e-143 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 416 / 1e-139 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 403 / 2e-134 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 402 / 4e-134 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 346 / 4e-117 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 217 / 6e-63 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 201 / 5e-57 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10005184 pacid=23163368 polypeptide=Lus10005184 locus=Lus10005184.g ID=Lus10005184.BGIv1.0 annot-version=v1.0 ATGTCAGGAGGTGGAACGCAGAATAGTTTGAGGAAGGCACTTGGGTCAATCAAGGACACCACCACTGTTTCATTGGCCAAAATTAATAGTGATTACAAGG AATTGGACATTGCAATAGTTAAGGCTACAAATCATGTTGAAAGACCGGCAAAAGAGAAACATATAAGAGCAAGCTTACTTGATATTACCCCCCATCTTGC AGCCGTTTTTGCTGCCATTTCAGCTACCAGGCCTCGTGCCGATGTTGCATATTGCATCCATGCCCTTGCCAGAAGGTTATCCAAGACGCATAATTGGGCG GTGGCCTTGAAAACTTTGCTTATCATCCATCGCGCTTTGAGGGAAGTTGACCCTACGTTCCACGAGGAGTTGATCAACTATGGCAGAAGCAGAAGCCAAA TGCTAAATATGTCTCATTTTAAAGACGATTCCAGCCCAAATGCATGGGATTATTCTGCTTGGGTTCGCACTTATGCCTTGTTTTTGGAGGAGAGGATGGA ATGTTTTCGAGTTCTGAAATATGACATTGAGGCAGATCGACCTAGGACCAAAGATTTGGAAACTGCTGAATTGCTGGACCAACTGCCGGCCTTGCAGCAA CTCCTTTCCCGCGTTCTCAACTGTCAGCCACAAGGTGCTGCTGTCAGTAACTTTATTATTCGATTGGCACTTTCAATGGTTGCTTCAGAAAGTGTGAAGA TCTATCAAGCTATTACTGATGGAACAGCAAATTTAGTGGACAAGTTCTTTGAGATGCCACGCCCTGAAGCTGTGAAGGCTCTAGAGATCTATAGGAGAGC CTGCCAGCAGGCAGAGAGACTCTCGGAATTTTATGAGATATGCAAAAGTGTGGACATAGGTCGTGGAGAAAGGTTCATCAAAATTGAACAGCCTCCTGCA TCTTTCTTACAAACCATGGAAGAGTATGTGCGAGATGCTCCACGCATGTCTATTGCTAACAAAGATCAGGTTGTGGGCAACAAGATTGCTGCACCAAAGG AAATCTTAGCCATAGAGTACAAGCAAGAACCAGAGGTGGTGAAGGACGTGGAAGAACACCCTCCATCACCTCCTAAACCTGAACCGGCCATTAAAGAAGA TAAGCCTCCCGTTGTTGCACCACCTGATTTGTTGAACTTGGATGATCCAGCCACCATTGCTTCTTCAGAACTTGATGAGAAAAATTCCCTTGCCTTGGCT ATTGTCCCTGTTGGTGACCAACCAACTGCTACGGTGCCAAGTCAAGCGAATGGAACAGGTTGGGAACTGGCACTCGTTACAGCTCCAAGTTCAAATGAAA CTGCAACTGCTGCCAGTAAACTGGGGGGAGGGCTAGATAAGCTTACACTGGACAGCTTATATGATGATGCAATCAGAATGAAAAGTCAGCCCACAAGCTA CAATCCTTGGGAGGCTGGTCAGATGAACGGTTCGATGATGCAAGGCGCCCAACTCGATCCTTTCTTTGCCTCCAATGGAGTTGCTGCACCACACAATGTG CAAATGGCAAGTATGGCGAATCAGCAGCAGCAGGCTTTCATGTGGCAACAGCAGCAACAGCAGATGATGATGATGGCCGCCCCACAATTCCAACAGCAAG CCAACCCTTTCGCAGCAAATACGTATGGAACCGGGGTTCAGTATGGCACAGGTATGCCGCCGGTTCAAGCGTACAATCCGTATCCAGGATACCACTAA
AA sequence Show only first row Show all	>Lus10005184 pacid=23163368 polypeptide=Lus10005184 locus=Lus10005184.g ID=Lus10005184.BGIv1.0 annot-version=v1.0 MSGGGTQNSLRKALGSIKDTTTVSLAKINSDYKELDIAIVKATNHVERPAKEKHIRASLLDITPHLAAVFAAISATRPRADVAYCIHALARRLSKTHNWA VALKTLLIIHRALREVDPTFHEELINYGRSRSQMLNMSHFKDDSSPNAWDYSAWVRTYALFLEERMECFRVLKYDIEADRPRTKDLETAELLDQLPALQQ LLSRVLNCQPQGAAVSNFIIRLALSMVASESVKIYQAITDGTANLVDKFFEMPRPEAVKALEIYRRACQQAERLSEFYEICKSVDIGRGERFIKIEQPPA SFLQTMEEYVRDAPRMSIANKDQVVGNKIAAPKEILAIEYKQEPEVVKDVEEHPPSPPKPEPAIKEDKPPVVAPPDLLNLDDPATIASSELDEKNSLALA IVPVGDQPTATVPSQANGTGWELALVTAPSSNETATAASKLGGGLDKLTLDSLYDDAIRMKSQPTSYNPWEAGQMNGSMMQGAQLDPFFASNGVAAPHNV QMASMANQQQQAFMWQQQQQQMMMMAAPQFQQQANPFAANTYGTGVQYGTGMPPVQAYNPYPGYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10005184 [exp]	0	1
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	1.7	0.8646
AT1G08800			Protein of unknown function, D...		Lus10006566 [exp]	3.7	0.7916
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	4.0	0.8318
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032660 [exp]	5.0	0.8059
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	5.5	0.8136
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012631 [exp]	6.0	0.7847
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10014844 [exp]	7.3	0.7955
AT1G16270			Protein kinase superfamily pro...		Lus10031749 [exp]	8.0	0.8076
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	8.9	0.7847
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10004124 [exp]	9.8	0.7469

Compare expression of checked genes

Lus10005184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.