Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G11000 832 / 0 ATMAK10 MAK10 homologue (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038121 [exp] 1398 / 0 AT2G11000 897 / 0.0 MAK10 homologue (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G065000 [exp] 1085 / 0 AT2G11000 889 / 0.0 MAK10 homologue (.1.2) Potri.018G125171 [exp] 1054 / 0 AT2G11000 862 / 0.0 MAK10 homologue (.1.2) Potri.T124807 [exp] 1054 / 0 AT2G11000 863 / 0.0 MAK10 homologue (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04112 [flax] [poplar] Mak10 Mak10 subunit, NatC N(alpha)-terminal acetyltransferase
Representative CDS sequence Show only first row Show all	>Lus10005185 pacid=23163364 polypeptide=Lus10005185 locus=Lus10005185.g ID=Lus10005185.BGIv1.0 annot-version=v1.0 ATGAACTGGAACAGTACCACAGCGGAGCTTCGGATGAACCGCTGCCCTACTCCGCCGCACACATCTGCCGTTACCGCCAGTCCAAACACTGTTTGGGCCG ATGCCACCCCGCTCCTCCAGACCGCTTGCACAGATCTTCGGGATGGGGAGCTTATTCATGGCAACAATTTTAATCTTTTTGCGGCAATGTCAGCTTTAGA GATAATGGACCCAAAGATGGATTCAGGTATGATATGCAAGTACTATTCTGTTGATGAGGCTATCGAAGATGGTGTTGCTCCAATTCCAATAAGCTTTGAT AGAGCGACAGATGTTCAATGTACAATTGATGTCATGGACCACCTTTTAGCTTGTGAGGCAACGTGGCACAAGGGCCACTCACTTGCTCAAACTGTTTTCT CATGTATCTACTTGTTAAGGCCTGAGAGAACAGCCTCATCCCCAATATTGCATTCATATTGTAAAATCGTACGATCCACCTGCAAGGCTATTGTTTCAGT TGTCTCAGATGCTCGTACACATGAAGAAGAGGATCTTTTTACCATGGCTTATGGACTTCCATTGAATGGGGATGGCGATGAAAAGAGCTTATCATTGCTA AATGCCGTTGAAGAGAACGTTTGTCGCCAGCTGCGTGCTTGCAAGGCTCAGTCATCTAGAAGAAAAGGTTTAGAAGATATGGAGCCTTTGCAATCTGATA TTGATACAGAGGAGAGCTACTGTAAGGCATTGTTATCCCGCCTACGCTTTCGTAAGCTTTTTTTTCACGTACTTGCGTGTATGAAGCGACCTCAAGGAAG AGGCCTGGAGCTGGCCAGGAAACATATAGCTTCATCCATATCAGAGTTGGAAATAATTCGCAAATCAGCAGATTTTCTAATAGCTACGGCTTCTGGGTCT TGTTCAAATGGTATAGAAGATAGAACAACTGCATCTGGGCGGAAAGCTATTGGTTTTGATGCTAGTTTGAACAGTAGAGTATCTGCTCCTGCTCCACCTC GCTCTATTAAAATGCTTAGTTGGAATAAGGCCATTGAGTATTTTGAAAAACTTCTTCGTGATCTAGATTTTATTTGTTCCTATTCATTGGATCCATCATT GGAAGTTGTGCTGCGCTTCGTGGCTCAGTTTCAGACTTGTCAACCTGATCTTGTTGCAAGATCACATCTGCAGCTTTTGCTAGTTCAAGAGGGAAGACTT TATGGCCGGGATCCTATGTTTGCTGTAATTACTAGAGCTGCAGGGTTGCCTGAGACCACAAAACATCACGATATTCAGAGTAATGAATCTGTTATACAAC TTGGCCAGTTAATCATCAACATGCTGAAAGTTGTTTGTACAAATTCTGCATGGCAAAGGCGTAAACTAGGCAAGAGTTTGCAAGATTGGCGTGTAATCTA TGTACAGCTAGAGCTTTCTTTGAAAACTGAGTTTGGAGAAGTATCAACATCAAATGATGAGAACATTACCGAAAAGATTGTGAAGCACATCCTGATTTGG GTGGAGGAGCAAACATACTGGATAGCATGTCGCTTTCTGGTGCTGGGTTTCGAGTTGGAGCTTTATTCTCCTTGTGAATACTTCATGGTGTACTGGTATA TGTATGCGGTCTTGGTCAAGCTTGCTGAGAAAACACATTTTAGGATAGCGATGACTGAGGCCGAGGCCACTGGTACAGCTAAACGAAAAGGGAAAAAACG GAAGGATTCCCCAAAAGATATTGGAAAGGAGACTCGGATTCCACCAGCGGTGCTATTCCTTCAGTGTCAAATATGCCTTGCTGAAGGACTCACTCTGCTG CTAGCTGCTTTAAGGAATGAAATGGCAGTATTGCAAAGTCCAACCCCATTCAACTCTGAACAAGAGATATTCCTCCAGCATTTCGAGCTACTCCAGACAG CTAGTGTTCCTGAACACATAACCTACCACTCATTCCAGGAATCCACATCATATGCTCGATTCTCGAACATAGCGTTGCACAACTACTTTGAAGATGCGCA GAAGCTGGCGAAGGAGATAAAGAGCAGCTTTGCTAATGACTCAGACCGGTTAGCGGAGCTCAAAAGGTTAGAACAGGTAGCGGAGCACAATGGGGTGGCT GTGAATCTGATATGCAAACTTGGAGCGGTGGATCCTTCGCTGAAGGTGTCGTTTGAGTTCATACACCACCCTTGTTTTGCAACTGCAGTAATTCGGCGAG CTTGA
AA sequence Show only first row Show all	>Lus10005185 pacid=23163364 polypeptide=Lus10005185 locus=Lus10005185.g ID=Lus10005185.BGIv1.0 annot-version=v1.0 MNWNSTTAELRMNRCPTPPHTSAVTASPNTVWADATPLLQTACTDLRDGELIHGNNFNLFAAMSALEIMDPKMDSGMICKYYSVDEAIEDGVAPIPISFD RATDVQCTIDVMDHLLACEATWHKGHSLAQTVFSCIYLLRPERTASSPILHSYCKIVRSTCKAIVSVVSDARTHEEEDLFTMAYGLPLNGDGDEKSLSLL NAVEENVCRQLRACKAQSSRRKGLEDMEPLQSDIDTEESYCKALLSRLRFRKLFFHVLACMKRPQGRGLELARKHIASSISELEIIRKSADFLIATASGS CSNGIEDRTTASGRKAIGFDASLNSRVSAPAPPRSIKMLSWNKAIEYFEKLLRDLDFICSYSLDPSLEVVLRFVAQFQTCQPDLVARSHLQLLLVQEGRL YGRDPMFAVITRAAGLPETTKHHDIQSNESVIQLGQLIINMLKVVCTNSAWQRRKLGKSLQDWRVIYVQLELSLKTEFGEVSTSNDENITEKIVKHILIW VEEQTYWIACRFLVLGFELELYSPCEYFMVYWYMYAVLVKLAEKTHFRIAMTEAEATGTAKRKGKKRKDSPKDIGKETRIPPAVLFLQCQICLAEGLTLL LAALRNEMAVLQSPTPFNSEQEIFLQHFELLQTASVPEHITYHSFQESTSYARFSNIALHNYFEDAQKLAKEIKSSFANDSDRLAELKRLEQVAEHNGVA VNLICKLGAVDPSLKVSFEFIHHPCFATAVIRRA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10005185 [exp]	0	1
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10037784 [exp]	2.0	0.8792
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10032065 [exp]	2.4	0.8834
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10026955 [exp]	2.6	0.8769
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Lus10018845 [exp]	5.9	0.8538
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10015707 [exp]	6.9	0.8840
AT5G28060			Ribosomal protein S24e family ...		Lus10015941 [exp]	7.5	0.8714
AT1G07990			SIT4 phosphatase-associated fa...		Lus10037400 [exp]	10.0	0.8641
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	10.0	0.8881
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	13.9	0.8761
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	17.7	0.8387

Compare expression of checked genes

Lus10005185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.