Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42180 479 / 4e-167 Exostosin family protein (.1.3) AT5G20260 479 / 6e-167 Exostosin family protein (.1) AT5G33290 478 / 5e-166 XGD1 xylogalacturonan deficient 1 (.1) AT5G11130 461 / 1e-159 Exostosin family protein (.1) AT3G07620 389 / 1e-131 Exostosin family protein (.1) AT5G03795 387 / 4e-130 Exostosin family protein (.1) AT5G25310 363 / 3e-121 Exostosin family protein (.1) AT4G16745 307 / 7e-99 Exostosin family protein (.1.2) AT5G19670 300 / 3e-95 Exostosin family protein (.1) AT4G32790 291 / 5e-92 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039980 [exp] 635 / 0 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10027707 [exp] 474 / 5e-165 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 401 / 4e-136 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10001917 [exp] 400 / 3e-135 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10039142 [exp] 389 / 2e-130 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 377 / 1e-128 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10008751 [exp] 381 / 1e-127 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 380 / 1e-126 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10001958 [exp] 300 / 5e-99 AT5G25310 372 / 1e-127 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G124832 [exp] 538 / 0 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.T124507 [exp] 536 / 0 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.T124607 [exp] 518 / 0 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 516 / 0 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.018G125058 [exp] 502 / 4e-175 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.T124707 [exp] 502 / 4e-175 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.006G064700 [exp] 499 / 2e-174 AT5G20260 563 / 0.0 Exostosin family protein (.1) Potri.006G064600 [exp] 492 / 9e-172 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.006G064800 [exp] 491 / 6e-171 AT5G20260 556 / 0.0 Exostosin family protein (.1) Potri.018G025200 [exp] 484 / 3e-169 AT5G11130 530 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10005186 pacid=23163359 polypeptide=Lus10005186 locus=Lus10005186.g ID=Lus10005186.BGIv1.0 annot-version=v1.0 ATGGCGGAGCAAAGCTGCTCTTCCGGCGGCCGTCCCTTTCTCACCTTCTTCCCCATTTTCCTTGTCGTCCTCTTCCTTCTCTTTACCGTCTCCCCTTTTA GCGGCGGTAACATTCCGCGTCTTGTTTCCTACCTCAACCTCTCAAACGTCACGGAAGCACAGCCACTTGTTGAGGACGGAAAAGGTAACGGTGACGGAAA CGCTACTGGTGGTGGTGGGCACATTAAGGACAGTTTTCTGGAAAGTGATGAAAAGGATGTTGATAGTGTTATTAGCAATGTGATGAAAATCGAGCAAGAT TTAGCAAGATCACGAGCCGCCATTCGCGAAGCCATCCGAACTAAGAGCTTTAAATCCTATAAAGATGAGGATCTCATACCAAGGGGTCCTGTGTATCGAA ATCCTTACGCTTTTCAACAGAGCCACATTGAGATGGTGAAGCGGTTTAAGATATGGACCTACAAAGAAGGAGACAAGCCACTAGTCCACCAAGCTCCGAT GAACAACATTTACTCCATTGAGGGCCAATTCCTAGACGAAATGGAGAGTGGGAAGAGCCCATTTCAAGCCAATTTTCCTCAAGAGGCACACATGTTTTTG TTACCATTTAGTGTTGCTTCCATAGTTCACTATATATATACTCCCATTTTGTCTAAAAAGGACTACAACCGTGATCGTCTCCATAGGATTGTCGCTGATT ATGTCGACGTGGTAGCTAATAAGTATCCCTTTTGGAACCGGTCGGGTGGTGCTGACCACTTCATGGTCTCGTGTCACGATTGGGGACCCGACATCTCCAC AGCAAATCCAGACCGCTATTCAAAGTTCGTTCGGGTCCTATGCAATGCCAACACTTCGGAAGGATTCAAACCCTCTCGTGATGCATCGCTACCAGAGGTT TATCTAGAACACAATCGACTTAACCCGCTTCAAGTAGGGCAAGACTCGTCCAACCGAACGATGCTGGCCTTCTTTGCCGGTGGGATCCATGGATACATAC GTCAAATAATGTTCGAGCATTGGAAGGAAAAGGACGACCAAGTTCAAGTTTTCGAGAAACTCCCACGAAGGAATAGCTACATAACCAAGATGGGTCAGAG CAAGTTTTGTCTGTGTCCAAGTGGGTACGAGGTTGCGAGCCCGAGGATTGTCGAGGCAATAAACCAAGGATGCGTGCCGGTGTTGATATCAAAGAATTAC TCGTTGCCTTTTGCGGAAGTGTTGGATTGGGACAAGTTCACGGTGACGATTCCGGTGGAGAGGATTGGAGAAATTAAGAGTATTTTGGAAGGGATTTCAG AGGAGAAGTATTTGGAAATGTATGAGAGGGTGAAGAGTGTGAGGAGGCATTTTGTGTTAAATCGTCCAGCAAAGCCTTACGATTTGCTTCACATGGTGAT ACACTCTTTGTGGCTCAGGAGGCTGAATGTCAAGGTGTTGTAG
AA sequence Show only first row Show all	>Lus10005186 pacid=23163359 polypeptide=Lus10005186 locus=Lus10005186.g ID=Lus10005186.BGIv1.0 annot-version=v1.0 MAEQSCSSGGRPFLTFFPIFLVVLFLLFTVSPFSGGNIPRLVSYLNLSNVTEAQPLVEDGKGNGDGNATGGGGHIKDSFLESDEKDVDSVISNVMKIEQD LARSRAAIREAIRTKSFKSYKDEDLIPRGPVYRNPYAFQQSHIEMVKRFKIWTYKEGDKPLVHQAPMNNIYSIEGQFLDEMESGKSPFQANFPQEAHMFL LPFSVASIVHYIYTPILSKKDYNRDRLHRIVADYVDVVANKYPFWNRSGGADHFMVSCHDWGPDISTANPDRYSKFVRVLCNANTSEGFKPSRDASLPEV YLEHNRLNPLQVGQDSSNRTMLAFFAGGIHGYIRQIMFEHWKEKDDQVQVFEKLPRRNSYITKMGQSKFCLCPSGYEVASPRIVEAINQGCVPVLISKNY SLPFAEVLDWDKFTVTIPVERIGEIKSILEGISEEKYLEMYERVKSVRRHFVLNRPAKPYDLLHMVIHSLWLRRLNVKVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20260			Exostosin family protein (.1)		Lus10005186 [exp]	0	1
AT5G14920			Gibberellin-regulated family p...		Lus10014519 [exp]	1.4	0.9422
AT3G05390			unknown protein		Lus10004494 [exp]	1.7	0.9469
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024648 [exp]	2.4	0.9288
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10014332 [exp]	2.8	0.9204
AT5G46230			Protein of unknown function, D...		Lus10001891 [exp]	3.7	0.8890
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10008259 [exp]	5.2	0.8539
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10005865 [exp]	7.5	0.8880
AT4G12840			Protein of unknown function (D...		Lus10008748 [exp]	7.7	0.8699
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002894 [exp]	8.8	0.9019
AT3G46170			NAD(P)-binding Rossmann-fold s...		Lus10006696 [exp]	10.4	0.8679

Compare expression of checked genes

Lus10005186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.