Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10230 159 / 2e-48 AtLCY, LYC lycopene cyclase (.1.2) AT5G57030 72 / 1e-15 LUT2 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013298 [exp] 263 / 5e-87 AT3G10230 508 / 3e-177 lycopene cyclase (.1.2) Lus10027278 [exp] 157 / 3e-46 AT3G10230 832 / 0.0 lycopene cyclase (.1.2) Lus10038986 [exp] 155 / 6e-46 AT3G10230 831 / 0.0 lycopene cyclase (.1.2) Lus10021576 [exp] 77 / 3e-17 AT5G57030 805 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Lus10017156 [exp] 73 / 1e-15 AT5G57030 801 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G159800 [exp] 192 / 4e-60 AT3G10230 538 / 0.0 lycopene cyclase (.1.2) Potri.004G197100 [exp] 179 / 6e-55 AT3G10230 533 / 0.0 lycopene cyclase (.1.2) Potri.006G043092 [exp] 160 / 2e-47 AT3G10230 794 / 0.0 lycopene cyclase (.1.2) Potri.016G040200 [exp] 159 / 2e-47 AT3G10230 770 / 0.0 lycopene cyclase (.1.2) Potri.006G147300 [exp] 69 / 2e-14 AT5G57030 723 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Potri.001G229166 [exp] 62 / 9e-13 AT3G10230 137 / 7e-40 lycopene cyclase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05834 [flax] [poplar] Lycopene_cycl Lycopene cyclase protein
Representative CDS sequence Show only first row Show all	>Lus10005190 pacid=23145827 polypeptide=Lus10005190 locus=Lus10005190.g ID=Lus10005190.BGIv1.0 annot-version=v1.0 ATGAGGGTACGATCGGTTAGATATTTGGTTGCTCGAACCTTAGCTCTAGCCCCAATCCTAGCTGACGTAATAGCAGAGTGCCTCGGCTCAACTAGGATGA TTCGAGGCACTCTGTTATATGACCGCATATGGAAAGGGCTATGGACATTCGATAGGAAATCAGAAAGAAAATTCTACAGATTTGGAATGGAGACATTGTT GAAATTCGACCTTAATGATACGAGAAGGTTTTTCGATGCCTTCTTCGATCTGGACCCTCACTACTGGCAAGGATTTCTTTCTTCGAAGCTCTCGCTTCCA GAGCTCATGTGGTTAAGCCTTTCTCTCTTCAGACATGCCTCAAATCCTTCGAGGGTTGATATTGTGACCAAGTGCCCTTTGCCTTTGGCTAAAATGGTGG GTAATTTGGCTCTCGAGTCCATCTGA
AA sequence Show only first row Show all	>Lus10005190 pacid=23145827 polypeptide=Lus10005190 locus=Lus10005190.g ID=Lus10005190.BGIv1.0 annot-version=v1.0 MRVRSVRYLVARTLALAPILADVIAECLGSTRMIRGTLLYDRIWKGLWTFDRKSERKFYRFGMETLLKFDLNDTRRFFDAFFDLDPHYWQGFLSSKLSLP ELMWLSLSLFRHASNPSRVDIVTKCPLPLAKMVGNLALESI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10005190 [exp]	0	1
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004768 [exp]	3.0	0.8258
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	4.9	0.8178
					Lus10013650 [exp]	5.7	0.8223
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	8.1	0.7883
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	8.5	0.8122
					Lus10013649 [exp]	9.9	0.7738
					Lus10024480 [exp]	11.2	0.7691
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10027456 [exp]	13.9	0.7755
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Lus10002884 [exp]	14.4	0.7194
					Lus10039764 [exp]	15.2	0.7714

Compare expression of checked genes

Lus10005190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.