Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22350 609 / 0 ELM1 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) AT5G06180 480 / 4e-169 Protein of unknown function (DUF1022) (.1), Protein of unknown function (DUF1022) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013300 [exp] 811 / 0 AT5G22350 626 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Lus10017009 [exp] 278 / 5e-83 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021334 [exp] 155 / 2e-44 AT5G22350 275 / 4e-91 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G197000 [exp] 658 / 0 AT5G22350 608 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Potri.009G159900 [exp] 642 / 0 AT5G22350 629 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Potri.016G075500 [exp] 526 / 0 AT5G22350 569 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF06258 [flax] [poplar] Mito_fiss_Elm1 Mitochondrial fission ELM1
Representative CDS sequence Show only first row Show all	>Lus10005191 pacid=23145841 polypeptide=Lus10005191 locus=Lus10005191.g ID=Lus10005191.BGIv1.0 annot-version=v1.0 ATGAAGCCTATAAGGTTACAGCTGCCGGATAGTCCTACCTCCGTCGGCGTCCCGGAGATCTTCGAAGGTGGCGCGCACAGCGTCGTCAGGCGCGCGGTTG TTATTGGAACTGGCTTTGCTGGGTCCGAGAATCAGAGCCTCGGTTTGGTTCGCGCGCTAGGACTCTATGACCAGCATGTTCTTTATAGGGTTACAAGACC AAGAGGTGGAATAAACGAGTGGTTGAAGTTTCTGCCAGTTTCTCTTCACAGATTTATATACTATATTATTAGTATCTGCTCACGTGTTTTGGTGACTGTA CGGGCCAAGAAAATTTCGCACATACCTTCGGAAAATGGTAGTAGTGCTGGATTGGCTTCAATTTTAGAAGCTGATGTGAAGCAGATTGTGAACATGGCAC ATGATAGTTTTGAAAAGGATGGTCCACTTTTGGTTGTTGCATCTGGAAGAGATACAGTATCTGTTGCAAGCTCTATAAAACGTTTAGCATCTGAAAAAGT TTTTGTTATTCAGATTCAACATCCCAGGTCTCATCTTAACAGATTTGACTTGGTGATCACTCCACGTCATGATTATTTTGCTTTGACCCCTGAAGGCAAG GAACAAGTTCCACAATTTATGCAGAGATGGATAACACCACAGGAACCCCCAGATGAGCATGTGGTACTGACAACAGGAGCTTTGCATCAAATTGATTTTT CCACCCTTCGCAGTGCAGCTAGCGCTTGGCATGACGAGCTTGCCCCTCTGCCAAAGCCATTGCTAGTGATTAATGTTGGAGGACCTGCAAGATATTGTCG TTATGGAGGTGACCTTGCAAAGCAGTTGTGTGACTCTCTGCTTAGTGTTCTTGCAACCTGTGGGAGTGTTAGAGTATCATTCTCAGAGAAAACCCCTAAA AAGGTTTCTACTGTAATAACCAAAGAACTCGCAAATAATCCGAAGGTCTTTATCTGGAATGGTGTAGAGCCAAATCCGTATATGGGACATTTAGCTTGGG CAGATGCATTTGTCGTTACGGCCGATTCAGTGAGTATGGTCAGCGAAGCTTGTACGACCGGTAAACCTGTCTATGTTATGGGATCCGAACGTTGCAAATG GAAGTTGGGAGAGTTCCACAAATCCTTGAAAGAGCGAGGCGTGATTCGACCATTCACCGGCTCCGAGGATTTATCGGAAAGCTGGAGCTATCCTCCCCTG AACGACACAGCTGAAGCAGCACGAAGAGTCCTGGAAGCGCTGGCTCAACGCGACCTTACATTGCGGCCGTAG
AA sequence Show only first row Show all	>Lus10005191 pacid=23145841 polypeptide=Lus10005191 locus=Lus10005191.g ID=Lus10005191.BGIv1.0 annot-version=v1.0 MKPIRLQLPDSPTSVGVPEIFEGGAHSVVRRAVVIGTGFAGSENQSLGLVRALGLYDQHVLYRVTRPRGGINEWLKFLPVSLHRFIYYIISICSRVLVTV RAKKISHIPSENGSSAGLASILEADVKQIVNMAHDSFEKDGPLLVVASGRDTVSVASSIKRLASEKVFVIQIQHPRSHLNRFDLVITPRHDYFALTPEGK EQVPQFMQRWITPQEPPDEHVVLTTGALHQIDFSTLRSAASAWHDELAPLPKPLLVINVGGPARYCRYGGDLAKQLCDSLLSVLATCGSVRVSFSEKTPK KVSTVITKELANNPKVFIWNGVEPNPYMGHLAWADAFVVTADSVSMVSEACTTGKPVYVMGSERCKWKLGEFHKSLKERGVIRPFTGSEDLSESWSYPPL NDTAEAARRVLEALAQRDLTLRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10005191 [exp]	0	1
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10043432 [exp]	1.7	0.8805
AT2G32240			unknown protein		Lus10003812 [exp]	3.9	0.8590
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	4.9	0.8666
AT5G46630			Clathrin adaptor complexes med...		Lus10030961 [exp]	6.3	0.8447
AT1G22870			Protein kinase family protein ...		Lus10030346 [exp]	6.3	0.8436
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10010161 [exp]	10.5	0.8435
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10033994 [exp]	13.2	0.8523
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	13.4	0.8605
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10038409 [exp]	15.5	0.8288
AT4G40050			Protein of unknown function (D...		Lus10012756 [exp]	18.3	0.8579

Compare expression of checked genes

Lus10005191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.