Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50620 273 / 5e-80 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G20280 154 / 1e-38 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013301 [exp] 970 / 0 AT3G20280 273 / 1e-83 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G358900 [exp] 511 / 6e-168 AT1G50620 314 / 8e-97 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005192 pacid=23145824 polypeptide=Lus10005192 locus=Lus10005192.g ID=Lus10005192.BGIv1.0 annot-version=v1.0 ATGGATCAGGAGGGGAACAACGGGGTTTCTATTCCTCCGGAATCGAATATAGATGGGGGCGGAGAAGCTGCTTCAGTCGGGCAGAAGAGGCCAATGGGCG AAGGTGGAGGGTTGGGTGTTAGTAGGCCGACCAAGAGGCTGAAGAATGGTGTGGGAGAGATGCAGGAAGTAGCTGAGATGGTACTTTTGTTGTCAGCCAT GGGGCAGATGCGAGGAGGGAGAGCTCCCACTGATGCTGAGGTCAAGCTGATGGCTGAGGCAAGGGAGAAATTAGTGGAGATGTGTCAGAATTTTGCGCCC AAGGAGTTGGTCCCTGGACATGTGATTGGGAAAGTTATCGATGATCTGGGGCTCAATTGGAAGCTCAAGGACCAGAGGTTAGGGTTTCGTGGGTCCAGGT TGTCAATTAAGGAGAAGGTTTCCCTTGCAAAGCGTAAGATGGAAGAACCCAAGAAGTTCACCACACCTGGTACACATGCATCTCAGACATCAAATCCAAG CTTTCCGACGCACACAGTTCGTTCTCTTCCGTTGGACAAACTAATTCATGCGCCGTTACCTTCTGGGAGTACTGTAGTTCATCCCCCCTTCACTCATGTT TCTGCAACTCCTTCAGTTCCAGTTACATATCTGCAGGCTTCTAATGTTGAAGTAAAAGGATCTGCAATATCCATGGGACTACCCTATAATCAGGCTGGAA GCACATCGGCCGTAGCAGCATCTAAGACACAGTTTGTTAAGATGGAAGGGGGACCAAATGGAAACACCTACACAGCTCAAGCAAATGCTTCTGTGAATCA TCCTCTGGTGAATGCTCCAACGTGGTCTTTACAGCCCAATTCTTTGTCTAAGATGGGGGCAGAAAGCAAGGTTCCGACTCATGCTCCAGTGAAGGCTGAG GGGATTGCTGACACAGGTGCACCACAAACAGCTCTTCAAACTGCTAGAGATCATACAGTTAGGCCATTTATTACTCAAACAACATCGAATATGCCAAGTG TGCATCAGTCTGTGCAAACTGTGAAATCTGTTTATAGCACTCACAATGGGATTGCAAGAACTGTTCAGAAGTTACTGCAACCAAAGCTTCCACAATATCC CACATGGATTCCACCTTCGAGGGAATACATGAACAAGGCTTTGAGTTGCCAAAGTTGCATTCTTACTATCAACGAGGTTGAAACTGTGGCAATTTGTGAT GCTTGTGAGAAAGGCTTTCACCTTAAATGCCTGGAATCTGCATTTCAGAAAGGTATTCCTAGAACTACCGAGTGGCACTGCATGAAATGCACATCACTAA GCAATGGAAAACCATTCCCTCCTAAATATGGCCGTGTCATGAGAAGCATGACCCCTCCAAAGGGGCTTGCAAGTGCTACCCATGGCGGACCTCAGTCCTT TTCAGATAAGAAGCTAGCGAATATGGTTCAAAGGGGTAATCACGAGAAAATGAGTTCTGTCTTACAAAGTGTCACAGAATCTGGAACTCCTGATTGCAGC AACCTTCAGTCAGCCTCTGGTACTAAGATTAGTAGTGAAAGAGGAACACCAAGAGATAGCATCACTTCAATGGGAAAAGATACGGATATGATGCATTGTG CTGGAACACTCCCAAATGATAGTGACTCGACAAAACCTCAGGTGCCCATTCATTATTCAGCTAAAGTTGCCTTGTCAGGTGATACTACTAGCAAGCAAAT TCAAGCAGCTGGATCACCCATACTCGACAGTAGATTTACTTCTGAACCTAAACTAGATCATTCTGATGTGGCATCCGCTCATGCTCTTGGTAAGCATGAA TCCAAGTCCCAGAACAATATGCAAGATGCTGCCCAAGCAGAACCACTAAACAACGTTGAAGGTTCTTTAGCTATTTGTCAAGCTGGGACTATCGTTGAAG AGTCGAGGAAAACAGGTGGAAGTAGTCCCTTAGCTACAGTGAGCAGTGTAAAGCAAAGTGCTGAAGGTGATGTTCAGCCTTCTCTTTTATTACGCGATGA CACGCGAAGTGAGGGTGGTGTTAGTAATGCACCTGACTCAAAACATGATGCCAAGCAAAGTGACCAAGGTGATATTCATCCACATTGTGCTTCAGGACCC AATTCCAACCAAAGTGAACATGGTGTTGATCATGCTCCTGCTTCCAAACATGATGTCCGGCAAAGTGAGCAAGTTGTAGCCTGTGGACCTTCTGCTTCAG ACCATAATGTTGTGCAAGGTATATTACATACACCTTTTGCCTCAGAACAATATGTCAAGCAAAATGAGCAAGGTGTTACTTGTGTACCTTCTGTGCCAGA CCACAACGTGAAGCAAAGTGAGCAAGAAGTTAATTATCTACCTGATTCAGAAAACAATGTCGAACAGAATCAGCAAGGTGTAGTTCATGCACCTTCTGCT TCAGGCAACAATGTTGAGCAAAGTGAACAAGTTGTTGCTTCTGCACCTTTTGATGCAGAACACAATGTTGAGGAAAGTGAGAAAGTTGTTGCTTCTACAC CTTGTGTACCTTCTGTGTCAGGTCACAATGTGAAGCAAAGTGAGCAAGAAGCTGGTTATCCCCCTGATTCAGAACACAATGTCGAACAGAATCAGCAAGG TGTAGTTCATGCACTATCTGCTTCAGACCACAATGTTGAGCAAAGTGAGCAAGTTGTTGCTTCTGCACCTTCTGATGCAGAGCACAATGTTGAGCAAATT GAGAAAGATGTTGCTTGTGCATCTTCTGATCCAGAACACCATGTTGAGCAGAAGGAGCACGAGTTTGCTCATGCACCTTCTGTTTCAGAACACAATGTCG AGCAGAGTGAGCAAAGTTTTGTTCATGCACCTGGTGCTGCAGACAACAACGTTCAGCTAAATGAGGAAGATGTTTCTCGTGCACCTTCTGGTTCAGAACA CTATGTTGAGCAAGCAGAATGA
AA sequence Show only first row Show all	>Lus10005192 pacid=23145824 polypeptide=Lus10005192 locus=Lus10005192.g ID=Lus10005192.BGIv1.0 annot-version=v1.0 MDQEGNNGVSIPPESNIDGGGEAASVGQKRPMGEGGGLGVSRPTKRLKNGVGEMQEVAEMVLLLSAMGQMRGGRAPTDAEVKLMAEAREKLVEMCQNFAP KELVPGHVIGKVIDDLGLNWKLKDQRLGFRGSRLSIKEKVSLAKRKMEEPKKFTTPGTHASQTSNPSFPTHTVRSLPLDKLIHAPLPSGSTVVHPPFTHV SATPSVPVTYLQASNVEVKGSAISMGLPYNQAGSTSAVAASKTQFVKMEGGPNGNTYTAQANASVNHPLVNAPTWSLQPNSLSKMGAESKVPTHAPVKAE GIADTGAPQTALQTARDHTVRPFITQTTSNMPSVHQSVQTVKSVYSTHNGIARTVQKLLQPKLPQYPTWIPPSREYMNKALSCQSCILTINEVETVAICD ACEKGFHLKCLESAFQKGIPRTTEWHCMKCTSLSNGKPFPPKYGRVMRSMTPPKGLASATHGGPQSFSDKKLANMVQRGNHEKMSSVLQSVTESGTPDCS NLQSASGTKISSERGTPRDSITSMGKDTDMMHCAGTLPNDSDSTKPQVPIHYSAKVALSGDTTSKQIQAAGSPILDSRFTSEPKLDHSDVASAHALGKHE SKSQNNMQDAAQAEPLNNVEGSLAICQAGTIVEESRKTGGSSPLATVSSVKQSAEGDVQPSLLLRDDTRSEGGVSNAPDSKHDAKQSDQGDIHPHCASGP NSNQSEHGVDHAPASKHDVRQSEQVVACGPSASDHNVVQGILHTPFASEQYVKQNEQGVTCVPSVPDHNVKQSEQEVNYLPDSENNVEQNQQGVVHAPSA SGNNVEQSEQVVASAPFDAEHNVEESEKVVASTPCVPSVSGHNVKQSEQEAGYPPDSEHNVEQNQQGVVHALSASDHNVEQSEQVVASAPSDAEHNVEQI EKDVACASSDPEHHVEQKEHEFAHAPSVSEHNVEQSEQSFVHAPGAADNNVQLNEEDVSRAPSGSEHYVEQAE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10005192 [exp]	0	1
AT2G40700			P-loop containing nucleoside t...		Lus10030523 [exp]	1.4	0.8914
AT1G06230		GTE4	global transcription factor gr...		Lus10017661 [exp]	3.2	0.8667
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033487 [exp]	3.7	0.8516
AT2G47300			ribonuclease Ps (.2.3)		Lus10001156 [exp]	3.9	0.8653
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001625 [exp]	4.9	0.8556
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10013301 [exp]	5.5	0.8560
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10028841 [exp]	10.8	0.8450
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	13.5	0.8329
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	16.6	0.8630
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	19.5	0.8255

Compare expression of checked genes

Lus10005192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.